yphsieh / 16S-ITGDBLinks
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
☆19Updated 2 years ago
Alternatives and similar repositories for 16S-ITGDB
Users that are interested in 16S-ITGDB are comparing it to the libraries listed below
Sorting:
- ☆83Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 2 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Graph-based assembly phasing☆87Updated 4 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 8 months ago
- whole genome MLST analysis☆47Updated 3 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Updated 5 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆106Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Gene-flank analysis tool☆30Updated 9 months ago