An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
☆19May 30, 2023Updated 2 years ago
Alternatives and similar repositories for 16S-ITGDB
Users that are interested in 16S-ITGDB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆18Feb 18, 2026Updated last month
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 9 months ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated last month
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Various scripts for efficient processing of 10k Salmonella genomes☆16Sep 16, 2021Updated 4 years ago
- ☆14Nov 27, 2025Updated 4 months ago
- ☆13Jan 6, 2021Updated 5 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Feb 19, 2026Updated last month
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 3 years ago
- simple program to rotate a circular sequence to start at a given position or string☆19Jul 9, 2023Updated 2 years ago
- ☆12Apr 3, 2025Updated 11 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated last year
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆97Jul 10, 2025Updated 8 months ago
- ☆15Sep 27, 2022Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆10Jan 24, 2023Updated 3 years ago
- A genome diagram generator for microbes and organelles☆61Mar 22, 2026Updated last week
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- Calculate confidence scores from Kraken2 output☆24Feb 18, 2024Updated 2 years ago
- A set of tools to analyse the output from TraDIS analyses☆24Aug 8, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Final repository for the project "Unsupervised Machine Learning for the Classification of Astrophysical X-ray Sources". V. S. Pérez-Díaz,…☆10Jan 23, 2024Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- The R code compares the performance metrics between logistic regression, SVM, Naive Bayes, Knn and random forest classifers in a 10 fold …☆15Mar 13, 2016Updated 10 years ago
- Program for estimating dN/dS in overlapping genes (OLGs)☆14Dec 2, 2022Updated 3 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆15Feb 19, 2026Updated last month
- Guided construction of single cell reference☆12Jul 3, 2023Updated 2 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- ☆12Jul 10, 2022Updated 3 years ago
- Count and compare 16S rRNA genes within a genus☆16Aug 1, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Github Action to deploy conda package to Anaconda repository☆11May 28, 2021Updated 4 years ago
- Calculate assocations between genes and traits☆29Mar 10, 2025Updated last year
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- Let's make a pretty map of European rivers using the Global River Classification dataset 🧑🏼💻 Check the full tutorial at https://milo…☆15May 30, 2023Updated 2 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago