yphsieh / 16S-ITGDBLinks
An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.
☆19Updated 2 years ago
Alternatives and similar repositories for 16S-ITGDB
Users that are interested in 16S-ITGDB are comparing it to the libraries listed below
Sorting:
- ☆83Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- ☆55Updated last year
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- whole genome MLST analysis☆45Updated last month
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Prediction of prophages from bacterial genomes☆79Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆73Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆41Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 8 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Microbiome classification pipeline☆66Updated 2 months ago
- Long-read metagenomic analysis☆103Updated last year
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆70Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆14Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago