www-bioinfo-org / CNCI
Coding-Non-Coding Index (CNCI)
☆39Updated 7 years ago
Alternatives and similar repositories for CNCI:
Users that are interested in CNCI are comparing it to the libraries listed below
- ☆89Updated 4 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆63Updated last year
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 6 months ago
- Scripts for next generation sequencing☆48Updated 5 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- Next-Generation Sequencing(NGS) toolkits.☆45Updated 8 years ago
- Tutorial Website☆57Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- ☆51Updated 6 years ago
- ☆40Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated 11 months ago
- QDNAseq package for Bioconductor☆49Updated 8 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago