alexcoppe / bio-dockers
Bio-dockers: dockerized bioinformatic tools
☆32Updated 3 months ago
Alternatives and similar repositories for bio-dockers:
Users that are interested in bio-dockers are comparing it to the libraries listed below
- Galaxy RNA workbench☆39Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- small rna-seq analysis package☆30Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆99Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- SeqMonk NGS visualisation and analysis tool☆49Updated 3 months ago
- Powerful statistics for VCF files☆69Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- mtDNA Variant Caller☆34Updated 4 months ago
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- GATK4 Best Practice Nextflow Pipeline☆32Updated 7 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- A collection of modules and sub-workflows for Nextflow☆26Updated 2 weeks ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Mapped QC analysis program☆44Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago