vierstralab / genome-tools

Related projects ⓘ

Alternatives and complementary repositories for genome-tools

• open2c / quaich
  snakemake pipeline for Hi-C post-processing
  ☆22Updated 4 months ago
• gagneurlab / absplice
  ☆33Updated last month
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆41Updated last year
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆27Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆57Updated 7 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 6 months ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆40Updated 2 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆26Updated last year
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 6 months ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated last year
• hoffmangroup / umap
  ☆24Updated 7 months ago
• kundajelab / idr
  IDR
  ☆30Updated last year
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 7 months ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• agalitsyna / RedClib
  Red-C data processing
  ☆13Updated last year
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆13Updated 3 months ago
• dejunlin / hicrep
  Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support
  ☆36Updated 9 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 5 years ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 3 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆29Updated last year
• Dowell-Lab / TFEA
  Transcription Factor Enrichment Analysis
  ☆34Updated 7 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 3 weeks ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆20Updated last year
• deeptools / HiCMatrix
  ☆11Updated 6 months ago
• nanoporetech / Pore-C-Snakemake
  ☆33Updated last year
• LappalainenLab / lorals
  ☆33Updated last year
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆41Updated 2 years ago