vierstralab / genome-tools
Processing and plotting tools for genomics data
☆20Updated 2 weeks ago
Alternatives and similar repositories for genome-tools:
Users that are interested in genome-tools are comparing it to the libraries listed below
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- Red-C data processing☆14Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 11 months ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆40Updated 2 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated 8 months ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆48Updated 5 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- Python reimplementation of hicrep with compatibility for sparse matrices☆17Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 10 months ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- ☆21Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆58Updated last year
- isoCirc☆10Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- A program for the analysis of single cell nanopore long read data☆16Updated 8 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- ☆12Updated 10 months ago
- Ultra-fast 5' and 3' demultiplexer☆26Updated 10 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆36Updated 6 months ago
- ☆33Updated last year
- ☆39Updated 6 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated this week
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- ☆12Updated 4 years ago