xmao / kobas
KOBAS: a command line tool for identifying significant pathways from genomic data
☆30Updated 14 years ago
Alternatives and similar repositories for kobas:
Users that are interested in kobas are comparing it to the libraries listed below
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆20Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆33Updated 9 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆72Updated 9 months ago
- Filter SAM file for soft and hard clipped alignments☆47Updated 8 months ago
- Adapters for trimming☆30Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- Evolutionary Transcriptomics with R☆42Updated last week
- fastx-utils using klib☆18Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆23Updated 6 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- iTAK☆38Updated 8 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- A software for calculating telomere length☆68Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated last month
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 years ago