lulab / lulab.github.ioLinks
Lu Lab @ Tsinghua University
☆19Updated 2 months ago
Alternatives and similar repositories for lulab.github.io
Users that are interested in lulab.github.io are comparing it to the libraries listed below
Sorting:
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- HemTools: a collection of NGS pipelines and bioinformatic analyses☆74Updated last month
- small rna-seq analysis package☆30Updated 3 years ago
- ☆51Updated 7 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆55Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- HPC based pipelines for variant calling using GATK☆17Updated 5 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Scripts for next generation sequencing☆49Updated 6 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆30Updated 6 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- Microbial analysis in TCGA data☆94Updated last year
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Extract data quickly from Juicebox via straw☆69Updated 10 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 6 months ago
- ☆89Updated 5 years ago
- Analysis pipeline for the GUIDE-seq assay.☆81Updated 2 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organi…☆44Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆40Updated last year
- New version of JACUSA -> 2.0☆30Updated 2 months ago
- Learn and practice the bioinformatics skills in 100 Days.☆80Updated 6 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆50Updated 5 months ago
- Accurate and flexible loops calling tool for 3D genomic data.☆114Updated 3 years ago