lulab / lulab.github.io

Related projects ⓘ

Alternatives and complementary repositories for lulab.github.io

• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆46Updated last year
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆25Updated last month
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆77Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆47Updated 5 years ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆26Updated 10 months ago
• tsailabSJ / circleseq
  ☆22Updated 6 years ago
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• jumphone / Bioinformatics
  Bioinformatics Workflows
  ☆20Updated 3 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆107Updated 2 months ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 3 years ago
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆39Updated 8 months ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated 3 weeks ago
• YeoLab / eCLIP
  ☆38Updated 2 years ago
• indexofire / ndafp
  New version
  ☆33Updated 7 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆61Updated 3 years ago
• fengzhanglab / Screening_Protocols_manuscript
  Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
  ☆47Updated 7 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆46Updated last month
• mgonzalezporta / TeachingMaterial
  RNA-seq data analysis practical
  ☆60Updated 10 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆23Updated 3 weeks ago
• zhangwei2015 / IMonitor
  This script use to analyze the immune repertoire sequenced by high throughtput sequencing
  ☆24Updated 2 years ago
• xryanglab / RiboCode
  release version
  ☆47Updated 2 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• bioinfo-biols / CIRI-long
  Circular RNA Identification for Nanopore Sequencing
  ☆18Updated 5 months ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆83Updated 2 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆38Updated last year
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆49Updated 2 years ago
• hms-dbmi / 3d-genome-processing-tutorial
  A 3D genome data processing tutorial for ISMB/ECCB 2017
  ☆50Updated 7 years ago