apa: research platform for the study of alternative polyadenylation, expressRNA.org
☆12Sep 2, 2021Updated 4 years ago
Alternatives and similar repositories for apa
Users that are interested in apa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 14, 2021Updated 4 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆16Jan 11, 2024Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆54Mar 21, 2026Updated 4 months ago
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆15Jul 11, 2026Updated last month
- RNA-binding protein motif analysis☆11Sep 29, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- ☆25Jun 27, 2023Updated 3 years ago
- cgat-flow repository☆16May 10, 2026Updated 3 months ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 6 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- iCount, protein-RNA interaction analytics☆25Dec 14, 2021Updated 4 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- Welcome page and service overview☆18Mar 29, 2023Updated 3 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆35Apr 3, 2026Updated 4 months ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆12Mar 2, 2023Updated 3 years ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 3 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 7 years ago
- ☆27Oct 22, 2025Updated 9 months ago
- cgat-apps repository☆37Jul 23, 2026Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Aug 6, 2026Updated last week
- Library to parse and process Nanoscope Dimension AFM files.☆10Jan 6, 2019Updated 7 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- UKRIN Kidney Analysis Toolbox☆14Mar 27, 2025Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 3 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago