Alternatives and similar repositories for minian

Users that are interested in minian are comparing it to the libraries listed below

• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• Whitlock-Group / HERBS
  ☆52Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• petersaj / AP_histology
  Histology processing
  ☆71Updated 2 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆78Updated 7 months ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated 4 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 9 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆142Updated 4 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆179Updated 3 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆31Updated last month
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated this week
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆65Updated 11 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆67Updated this week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 11 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 2 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆110Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆53Updated 2 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆98Updated last week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 2 months ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆17Updated last week
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆64Updated last week
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 3 weeks ago