miniscope analysis pipeline with interactive visualizations
☆98Jul 19, 2024Updated last year
Alternatives and similar repositories for minian
Users that are interested in minian are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All things Miniscope v4☆153Apr 10, 2026Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Jun 18, 2024Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆721Apr 16, 2026Updated last month
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆128Feb 2, 2024Updated 2 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Apr 11, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Free, platform independent, behavior tracking software.☆146Jun 20, 2025Updated 11 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆57Apr 29, 2026Updated 3 weeks ago
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Fiber photometry analysis☆24Apr 20, 2026Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆42Jan 6, 2026Updated 4 months ago
- Portable Miniscope Data Acquisition☆22May 11, 2026Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161May 8, 2026Updated 2 weeks ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆85May 14, 2026Updated last week
- A gui for browsing joint calcium imaging + behavioral data.☆56Jan 22, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆357Updated this week
- ☆21Apr 27, 2022Updated 4 years ago
- cell detection in calcium imaging recordings☆448May 3, 2026Updated 3 weeks ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆191Jan 26, 2026Updated 3 months ago
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆44Jul 26, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆201Oct 3, 2024Updated last year
- ☆33May 19, 2025Updated last year
- Synchronized data acquisition from diverse sources and flexible control for behavior experiments☆53May 15, 2026Updated last week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆56May 10, 2024Updated 2 years ago
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- ☆55Aug 30, 2024Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆22May 14, 2026Updated last week
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆31Jun 6, 2019Updated 6 years ago
- ☆41Mar 4, 2024Updated 2 years ago
- ☆29Oct 22, 2025Updated 7 months ago
- IaC codebase for the NeuroCAAS Platform☆40Dec 15, 2023Updated 2 years ago
- Code for Krause and Drugowitsch (2022). "A large majority of awake hippocampal sharp-wave ripples feature spatial trajectories with momen…☆15Apr 18, 2023Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆89Mar 11, 2026Updated 2 months ago