Bonsai package for controlling headborne, calcium imaging miniscopes
☆12Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for Bonsai.Miniscope
Users that are interested in Bonsai.Miniscope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆132Aug 12, 2026Updated 3 weeks ago
- Codebase for Cross-Spectral Factor Analysis (Gallagher et al., 2017)☆15Jan 18, 2021Updated 5 years ago
- A GUI and library for doing multi-fiber photometry☆19Oct 12, 2017Updated 8 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆55Jun 1, 2025Updated last year
- This repository contains the Matlab code for "Extracting grid characteristics from spatially distributed place cell inputs using non-nega…☆21Mar 23, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python code for estimation of linear-nonlinear model parameters☆23Apr 9, 2021Updated 5 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 8 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆14Sep 25, 2025Updated 11 months ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Jul 8, 2026Updated last month
- Synchronized data acquisition from diverse sources and flexible control for behavior experiments☆61Updated this week
- All things Miniscope v4☆156Apr 10, 2026Updated 4 months ago
- Action to run a command and post a comment to pull request☆14Updated this week
- Distributed behavioral experiments☆95Feb 19, 2025Updated last year
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Feb 26, 2025Updated last year
- 8 channel analog output shield for Arduino Uno☆13Dec 21, 2020Updated 5 years ago
- An open-source LabView program to control the instant FLIM system☆11Jul 13, 2021Updated 5 years ago
- Design, fabrication, and assembly files for CMOS imaging sensor PCB☆15Mar 16, 2017Updated 9 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆66Jun 18, 2024Updated 2 years ago
- ☆12Jun 19, 2024Updated 2 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 5 years ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- pyPhotometry code, GUI and micropython firmware☆16Jun 5, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Feb 27, 2024Updated 2 years ago
- A modular package to control stimulation and track behaviour☆50Nov 8, 2024Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆44Jul 26, 2021Updated 5 years ago
- 便利☆21May 29, 2019Updated 7 years ago
- ☆20Jun 7, 2026Updated 2 months ago
- Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue☆13Feb 5, 2025Updated last year
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Copula Granger causality for continuous time series☆12May 1, 2017Updated 9 years ago
- miniscope analysis pipeline with interactive visualizations☆101Aug 25, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆64Jul 1, 2023Updated 3 years ago
- Microglia morphology quantification tool☆14Apr 28, 2021Updated 5 years ago
- ☆14Jun 4, 2023Updated 3 years ago
- MATLAB code for local field potential analysis☆21Aug 5, 2022Updated 4 years ago
- Implementation of Aligned Cluster Analysis☆18Sep 29, 2018Updated 7 years ago
- Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"☆22Jul 16, 2021Updated 5 years ago
- Search Strategy analysis and more for spatial navigation data in rodents☆33Feb 10, 2026Updated 6 months ago