djamesbarker / pMATLinks
Fiber Photometry Modular Analysis Tool Suite
☆42Updated 4 years ago
Alternatives and similar repositories for pMAT
Users that are interested in pMAT are comparing it to the libraries listed below
Sorting:
- Repository for BehaviorDEPOT pipeline app files and source code☆39Updated 3 weeks ago
- Registration of cells across sessions.☆75Updated last year
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- ☆52Updated last year
- Fiber photometry analysis☆22Updated last month
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Histology processing☆72Updated last month
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 10 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- R Scripts to analyze deep lab cut point data and related data☆71Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 6 months ago
- ☆12Updated 9 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆139Updated last week
- A curated list of awesome Neuropixels resources.☆123Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆64Updated 2 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Updated this week
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆30Updated last month
- ☆18Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- Collection of probe description for probeinterface☆17Updated this week
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago