djamesbarker / pMAT
Fiber Photometry Modular Analysis Tool Suite
☆36Updated 3 years ago
Alternatives and similar repositories for pMAT:
Users that are interested in pMAT are comparing it to the libraries listed below
- Fiber photometry analysis☆22Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- ☆11Updated 8 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 8 months ago
- Registration of cells across sessions.☆72Updated 6 months ago
- Histology processing☆65Updated 11 months ago
- ☆52Updated 6 months ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated this week
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆25Updated this week
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated 2 years ago
- R Scripts to analyze deep lab cut point data and related data☆66Updated 2 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated this week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated last week
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- ☆19Updated last year
- Tools to work with Allen Inst CCF data in matlab☆128Updated 11 months ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated 11 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆57Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 3 months ago
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- ☆26Updated last year
- Closed-loop feedback optogenetic system☆9Updated 2 years ago