LINCellularNeuroscience / VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆181Updated 5 months ago
Alternatives and similar repositories for VAME:
Users that are interested in VAME are comparing it to the libraries listed below
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆193Updated last year
- ☆84Updated this week
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- Various scripts to support deeplabcut and what to do afterwards!☆152Updated last year
- a module for kinematic analysis of deeplabcut outputs☆138Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆58Updated last month
- R Scripts to analyze deep lab cut point data and related data☆66Updated 2 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆62Updated 11 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆164Updated 3 months ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆42Updated this week
- quantification of behavior across chronic social defeat stress☆10Updated 2 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆54Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆20Updated this week
- Registration of cells across sessions.☆73Updated 7 months ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆310Updated last week
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 6 months ago
- We turn natural language descriptions of behaviors into machine-executable code☆215Updated this week
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆34Updated last month
- Demo code for CAPTURE and DANNCE☆28Updated 3 years ago
- Workshop material for using DeepLabCut☆142Updated last year
- Code package that allows meta analyses of unsupervised behavior results☆16Updated 6 months ago
- ☆102Updated 2 months ago
- DeepGraphPose☆32Updated 2 years ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆92Updated this week
- ☆17Updated last year
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated 3 months ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆69Updated last year
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆49Updated 2 years ago