LINCellularNeuroscience / VAMELinks
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆193Updated 10 months ago
Alternatives and similar repositories for VAME
Users that are interested in VAME are comparing it to the libraries listed below
Sorting:
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆200Updated last year
- a module for kinematic analysis of deeplabcut outputs☆141Updated last year
- ☆93Updated 2 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 6 months ago
- Various scripts to support deeplabcut and what to do afterwards!☆155Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆173Updated 2 weeks ago
- ☆113Updated 6 months ago
- R Scripts to analyze deep lab cut point data and related data☆67Updated 2 years ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆61Updated last month
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆60Updated 2 years ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆29Updated last month
- ☆18Updated last year
- End-user version of the Mouse Action Recognition System (MARS)☆72Updated last year
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆330Updated this week
- DeepGraphPose☆32Updated 2 years ago
- quantification of behavior across chronic social defeat stress☆10Updated 3 years ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆31Updated last month
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆26Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 3 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆127Updated last month
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆51Updated 2 months ago
- Code package that allows meta analyses of unsupervised behavior results☆16Updated 2 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Registration of cells across sessions.☆75Updated 11 months ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆72Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆65Updated last month
- ☆52Updated 11 months ago
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year