LINCellularNeuroscience / VAMELinks
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆186Updated 8 months ago
Alternatives and similar repositories for VAME
Users that are interested in VAME are comparing it to the libraries listed below
Sorting:
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆197Updated last year
- Various scripts to support deeplabcut and what to do afterwards!☆154Updated last year
- a module for kinematic analysis of deeplabcut outputs☆141Updated last year
- ☆90Updated 2 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 5 months ago
- R Scripts to analyze deep lab cut point data and related data☆67Updated 2 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆68Updated last year
- ☆111Updated 5 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆168Updated 2 months ago
- DeepGraphPose☆32Updated 2 years ago
- quantification of behavior across chronic social defeat stress☆10Updated 2 years ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆326Updated this week
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated 6 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆28Updated 3 weeks ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆59Updated 2 weeks ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆29Updated last week
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆34Updated 5 months ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆44Updated last week
- ☆33Updated 4 years ago
- We turn natural language descriptions of behaviors into machine-executable code☆219Updated 2 months ago
- Quantify user-defined behaviors.☆77Updated this week
- Registration of cells across sessions.☆75Updated 10 months ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆50Updated 3 weeks ago
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆33Updated 4 years ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 3 years ago
- A codebase for tracking laboratory mice in videos☆10Updated 9 months ago
- Sample implementation of the MotionMapper behavioral analysis algorithms☆79Updated 4 years ago
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year
- Workshop material for using DeepLabCut☆144Updated last year