LINCellularNeuroscience / VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆174Updated last month
Related projects: ⓘ
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆189Updated 7 months ago
- a module for kinematic analysis of deeplabcut outputs☆132Updated 9 months ago
- ☆70Updated 2 weeks ago
- Various scripts to support deeplabcut and what to do afterwards!☆141Updated 10 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆49Updated last month
- An active learning platform for expert-guided, data efficient discovery of behavior.☆53Updated 3 months ago
- ☆98Updated last month
- R Scripts to analyze deep lab cut point data and related data☆60Updated last year
- End-user version of the Mouse Action Recognition System (MARS)☆58Updated 5 months ago
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated last month
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆154Updated last week
- We turn natural language descriptions of behaviors into machine-executable code☆199Updated last month
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆288Updated this week
- quantification of behavior across chronic social defeat stress☆9Updated 2 years ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆61Updated 11 months ago
- Workshop material for using DeepLabCut☆138Updated 11 months ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆25Updated 3 months ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆37Updated 2 weeks ago
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆14Updated 3 weeks ago
- DeepGraphPose☆32Updated last year
- ☆24Updated 3 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated last year
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆45Updated 4 months ago
- Demo code for CAPTURE and DANNCE☆27Updated 3 years ago
- Free, platform independent, behavior tracking software.☆118Updated 2 months ago
- miniscope analysis pipeline with interactive visualizations☆91Updated 2 months ago
- ☆210Updated last year
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆29Updated 4 months ago
- Registration of cells across sessions.☆67Updated last month
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆24Updated 6 months ago