LINCellularNeuroscience / VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆178Updated 3 months ago
Alternatives and similar repositories for VAME:
Users that are interested in VAME are comparing it to the libraries listed below
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆192Updated 11 months ago
- a module for kinematic analysis of deeplabcut outputs☆136Updated last year
- ☆81Updated 2 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated last month
- Various scripts to support deeplabcut and what to do afterwards!☆145Updated last year
- ☆102Updated this week
- End-user version of the Mouse Action Recognition System (MARS)☆59Updated 9 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆162Updated last month
- R Scripts to analyze deep lab cut point data and related data☆63Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆55Updated 7 months ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆306Updated this week
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆40Updated this week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆28Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 6 months ago
- Registration of cells across sessions.☆71Updated 4 months ago
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated last month
- DeepGraphPose☆32Updated 2 years ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆18Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆71Updated 4 months ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated 2 years ago
- Fiber photometry analysis☆22Updated last month
- Demo code for CAPTURE and DANNCE☆27Updated 3 years ago
- We turn natural language descriptions of behaviors into machine-executable code☆206Updated 5 months ago
- MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.☆34Updated 8 months ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Free, platform independent, behavior tracking software.☆125Updated 6 months ago
- Workshop material for using DeepLabCut☆141Updated last year
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 3 months ago
- Toolbox for analyzing behavioral videos and neural activity☆57Updated last year