LINCellularNeuroscience / VAME
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆184Updated 7 months ago
Alternatives and similar repositories for VAME:
Users that are interested in VAME are comparing it to the libraries listed below
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆194Updated last year
- Various scripts to support deeplabcut and what to do afterwards!☆154Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆58Updated last week
- a module for kinematic analysis of deeplabcut outputs☆140Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 months ago
- ☆88Updated this week
- R Scripts to analyze deep lab cut point data and related data☆66Updated 2 years ago
- ☆104Updated 3 months ago
- DeepGraphPose☆32Updated 2 years ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆317Updated this week
- End-user version of the Mouse Action Recognition System (MARS)☆65Updated last year
- quantification of behavior across chronic social defeat stress☆10Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆165Updated last month
- Workshop material for using DeepLabCut☆143Updated last year
- Demo code for CAPTURE and DANNCE☆28Updated 3 years ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆44Updated this week
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆29Updated 11 months ago
- Simple vispy-based frame-by-frame behavior annotation GUI. Also can display DeepLabCut poses within videos during annotation.☆14Updated 4 months ago
- Free, platform independent, behavior tracking software.☆128Updated 10 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- ☆33Updated 4 years ago
- Fiber Photometry Modular Analysis Tool Suite☆38Updated 3 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆13Updated last month
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆50Updated 2 years ago
- Registration of cells across sessions.☆75Updated 8 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 2 weeks ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆69Updated last year
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆47Updated last year
- Fiber photometry analysis☆22Updated last month