LINCellularNeuroscience / VAMELinks
Variational Animal Motion Embedding - A tool for time series embedding and clustering
☆193Updated 11 months ago
Alternatives and similar repositories for VAME
Users that are interested in VAME are comparing it to the libraries listed below
Sorting:
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆201Updated last year
- ☆96Updated last week
- a module for kinematic analysis of deeplabcut outputs☆143Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 7 months ago
- Various scripts to support deeplabcut and what to do afterwards!☆156Updated 2 months ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆62Updated 3 months ago
- ☆113Updated last month
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆60Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆175Updated last month
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆51Updated 3 months ago
- R Scripts to analyze deep lab cut point data and related data☆67Updated 2 years ago
- Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)☆29Updated 3 months ago
- DeepGraphPose☆32Updated 2 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆74Updated last year
- ☆18Updated last year
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆47Updated last week
- quantification of behavior across chronic social defeat stress☆10Updated 3 years ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆334Updated last week
- Code package that allows meta analyses of unsupervised behavior results☆16Updated 3 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆33Updated last week
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 6 months ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆72Updated last year
- ☆235Updated 4 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 11 months ago
- Registration of cells across sessions.☆75Updated last year
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆50Updated last year
- Free, platform independent, behavior tracking software.☆139Updated 2 months ago