lmbneuron / D-LMBmapLinks
☆40Updated last year
Alternatives and similar repositories for D-LMBmap
Users that are interested in D-LMBmap are comparing it to the libraries listed below
Sorting:
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆132Updated last week
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Multi-modal Image Registration And Connectivity anaLysis☆46Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded ax…☆32Updated 9 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- Easy Volumetric Segmentation with Deep Learning☆28Updated last month
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated this week
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆103Updated 2 months ago
- Script that registers Histology slices to volumetric image data☆11Updated 2 years ago
- Segment Anything for Medical Imaging☆27Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Tools for distributed alignment of massive images☆90Updated last week
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated last week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆260Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- ☆31Updated 4 years ago
- A napari plugin for itk-elastix☆39Updated 2 weeks ago
- Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration☆72Updated 2 months ago
- ☆92Updated 6 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆111Updated last week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆63Updated 3 weeks ago
- Python package for deep learning based image to image transformation☆53Updated last month
- A python algorithm for tracking cells in 3D deforming organs☆65Updated last month
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- ☆19Updated 3 years ago