☆40Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for D-LMBmap
Users that are interested in D-LMBmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep-learning based pipeline for analysis of whole-brain light sheet microscopy images☆11Sep 13, 2024Updated 2 years ago
- A tool for translating between common coordinate frameworks using deformation matrices.☆17Oct 15, 2026Updated 2 weeks ago
- ☆47Jun 18, 2026Updated 4 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27May 22, 2022Updated 4 years ago
- Python library for brain-wide quantification and spatial analysis.☆12Jun 26, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆32Oct 13, 2023Updated 3 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆126Updated this week
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆148Updated this week
- Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.☆13Oct 16, 2026Updated 2 weeks ago
- ☆10Dec 27, 2021Updated 4 years ago
- CloudReg☆11Apr 5, 2024Updated 2 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Oct 13, 2026Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Oct 22, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆61Oct 18, 2026Updated last week
- BIRDS plug-in on Fiji and attached jar package☆23Oct 7, 2021Updated 5 years ago
- Hardware documentation for mesoSPIM-Bechtop microscope project☆33May 11, 2026Updated 5 months ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Jul 4, 2022Updated 4 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆134Sep 8, 2026Updated last month
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆16Oct 13, 2026Updated 2 weeks ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated last year
- Code for StructN2V method and experiments☆24Jan 22, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Arduino Uno based signal generator for scientific applications.☆20Sep 24, 2019Updated 7 years ago
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Histology processing☆81Sep 23, 2026Updated last month
- Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data☆35Oct 24, 2026Updated last week
- The ANTsX Ecosystem for Mapping the Mouse Brain☆25Dec 2, 2025Updated 10 months ago
- ☆61Updated this week
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆23Mar 30, 2026Updated 7 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆65Aug 11, 2026Updated 2 months ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆18Feb 21, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 4 years ago
- Morphological embedding for single neuron with graph neuron networks☆22May 17, 2025Updated last year
- Transformer based region discovery in spatial transcriptomics (but mostly MERFISH) datasets☆20Mar 14, 2025Updated last year
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- Brainways☆25Aug 28, 2025Updated last year
- Build unbiased anatomical templates from individual images☆14Oct 13, 2026Updated 2 weeks ago