DeNardoLab / BehaviorDEPOTLinks
Repository for BehaviorDEPOT pipeline app files and source code
☆38Updated last week
Alternatives and similar repositories for BehaviorDEPOT
Users that are interested in BehaviorDEPOT are comparing it to the libraries listed below
Sorting:
- Histology processing☆72Updated last month
- ☆52Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Registration of cells across sessions.☆75Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- R Scripts to analyze deep lab cut point data and related data☆70Updated 2 years ago
- Calcium imaging inter-session alignment☆15Updated last month
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- Free, platform independent, behavior tracking software.☆143Updated 6 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆18Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Fiber photometry analysis☆22Updated last month
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆61Updated 2 years ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- ☆12Updated 9 years ago
- A curated list of awesome Neuropixels resources.☆122Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 10 months ago