DeNardoLab / BehaviorDEPOTLinks
Repository for BehaviorDEPOT pipeline app files and source code
☆39Updated last month
Alternatives and similar repositories for BehaviorDEPOT
Users that are interested in BehaviorDEPOT are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- Histology processing☆72Updated last month
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- R Scripts to analyze deep lab cut point data and related data☆71Updated 3 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Registration of cells across sessions.☆76Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Updated 9 months ago
- Calcium imaging inter-session alignment☆15Updated last month
- Fiber photometry analysis☆23Updated last week
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated this week
- ☆18Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Collection of probe description for probeinterface☆17Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Updated 2 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 10 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated last week
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- ☆12Updated 9 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Updated 8 months ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Updated last week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 2 years ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆66Updated 7 months ago