Repository for BehaviorDEPOT pipeline app files and source code
☆41Jan 6, 2026Updated last month
Alternatives and similar repositories for BehaviorDEPOT
Users that are interested in BehaviorDEPOT are comparing it to the libraries listed below
Sorting:
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Feb 16, 2026Updated last week
- Fiber Photometry Modular Analysis Tool Suite☆43Jul 26, 2021Updated 4 years ago
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Sep 25, 2025Updated 5 months ago
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆206Feb 9, 2024Updated 2 years ago
- NeuroMatic☆25Jul 8, 2025Updated 7 months ago
- PyRat is a user friendly library in python to analyze data from the DeepLabCut. Developed to help researchers unfamiliar with programming…☆52Apr 22, 2024Updated last year
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆352Updated this week
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆199Oct 3, 2024Updated last year
- An active learning platform for expert-guided, data efficient discovery of behavior.☆67Jun 11, 2025Updated 8 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 3 years ago
- Analysis of ultrasonic vocalizations from mice using computer vision and machine learning☆27Jun 30, 2023Updated 2 years ago
- End-user version of the Mouse Action Recognition System (MARS)☆78Mar 26, 2024Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆55Jan 22, 2025Updated last year
- Closed-loop feedback optogenetic system☆10Apr 5, 2022Updated 3 years ago
- Free, platform independent, behavior tracking software.☆143Jun 20, 2025Updated 8 months ago
- Fiber photometry analysis☆23Jan 28, 2026Updated 3 weeks ago
- ☆119Aug 11, 2025Updated 6 months ago
- ☆12Jun 9, 2016Updated 9 years ago
- DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition☆51Updated this week
- A mouse brain histology tool for neuroscientists.☆13Feb 16, 2026Updated last week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- AlphaTracker is a computer vision pipeline with the practical and real-time advantages , which requires minimal hardware requirements and…☆75Sep 26, 2023Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated last month
- Deep Audio Segmenter, unsupervised☆10Feb 20, 2026Updated last week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Oct 21, 2022Updated 3 years ago
- Fiber photometry data preprocessing - denoising, photobleaching and motion correction.☆29Nov 10, 2023Updated 2 years ago
- ☆53Aug 30, 2024Updated last year
- Tools for machine learning of animal behavior☆15Mar 8, 2024Updated last year
- Code for Functional Mixed Models for Fiber Photometry☆15Jul 30, 2025Updated 6 months ago
- A Deeplabcut network trained to label mice in open field arena with topdown view☆11Feb 21, 2021Updated 5 years ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Feb 19, 2026Updated last week
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- A Bonsai interface for real-time markerless pose estimation using DeepLabCut☆53Jun 1, 2025Updated 8 months ago
- System for wireless optogenetic stimulation☆13Jun 14, 2022Updated 3 years ago
- Large field-of-view miniature microscope for rats and larger animals.☆17Jul 14, 2023Updated 2 years ago
- Building rodent behavioral testing devices using the Raspberry Pi computer.☆19Sep 28, 2021Updated 4 years ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Jul 1, 2023Updated 2 years ago