Alternatives and similar repositories for covid-19-sse

Users that are interested in covid-19-sse are comparing it to the libraries listed below

• JoachimGoedhart / PlotsOfDifferences
  Shiny App for comparison of samples and plotting effect size
  ☆29Updated last year
• caijun / res4flu
  Resources for Influenza Research
  ☆23Updated 3 years ago
• sdwfrost / mevr-course-2016
  Molecular Epidemiology of Viruses in R
  ☆19Updated 10 years ago
• ebov / space-time
  Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016
  ☆59Updated 7 years ago
• alyssafrazee / RSkittleBrewer
  for those times you want to make plots with candy-themed color schemes
  ☆59Updated 5 years ago
• devillemereuil / QGglmm
  Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observ…
  ☆16Updated 10 months ago
• SISBID / Data-Visualization
  Materials for Module 2 of the SISBID Workshop, Visualization of Biomedical Big Data
  ☆26Updated 8 years ago
• mdedge / stfs
  Code and supplemental material for Statistical Thinking from Scratch
  ☆62Updated 4 years ago
• CDCgov / SaviR
  The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.
  ☆19Updated 8 months ago
• ropensci / taxizedb
  Tools for Working with Taxonomic SQL Databases
  ☆33Updated last month
• ibest / Seed
  R/Shiny application for viewing microbial community data
  ☆19Updated 4 years ago
• mtorchiano / lmPerm
  Permutation Tests for Linear Models
  ☆16Updated last week
• trvrb / sismid
  Pathogen evolution, selection and immunity
  ☆45Updated last year
• vals / Reading-PCA
  ☆16Updated 8 years ago
• HopkinsIDD / phylosamp
  The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…
  ☆13Updated 2 years ago
• ropensci / taxa
  taxonomic classes for R
  ☆50Updated 4 months ago
• nstrayer / D3ManhattanPlots
  An R HTMLWidget for making interactive manhattan plots for GWAS.
  ☆20Updated 10 years ago
• reconhub / outbreaker2
  Disease outbreak reconstruction from epidemiological and genetic data
  ☆34Updated last year
• ahgroup / DSAIRM
  R Package - Dynamical Systems Approach to Immune Response Modeling
  ☆34Updated last year
• SISBID / Unsupervised-Learning
  ☆52Updated 4 months ago
• UVa-R-Users-Group / meetup
  Code from UVA/Cville R Users Group Meetups
  ☆25Updated 7 years ago
• CenterForStatistics-UGent / RCM
  A model-based visualization method for microbiome data
  ☆16Updated last month
• joey711 / shiny-phyloseq
  An interactive web application for demonstrating and using phyloseq.
  ☆60Updated 6 years ago
• SISBID / Reproducible-Research
  Materials for Module 3 of the SISBID Workshop, Reproducible Research
  ☆63Updated 8 years ago
• stephenturner / kgp
  1000 Genomes Project Metadata R Package
  ☆20Updated last month
• cjbattey / driftR
  population genetic simulations with R and Shiny
  ☆28Updated last year
• bryanhanson / HiveR
  An R package for creating and plotting 2D and 3D hive plots.
  ☆72Updated last year
• seandavi / sars2pack
  An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
  ☆59Updated 3 years ago
• SISBID / Supervised-Learning
  ☆54Updated 4 months ago
• blab / global-migration
  Analysis of global migration patterns of seasonal influenza viruses
  ☆22Updated 6 years ago