schatzlab / appliedgenomics2019Links
Materials for Spring 2019 Applied Genomics Course
☆21Updated 6 years ago
Alternatives and similar repositories for appliedgenomics2019
Users that are interested in appliedgenomics2019 are comparing it to the libraries listed below
Sorting:
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆16Updated 6 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Personal diploid genome creation and coordinate conversion☆30Updated 5 months ago
- ☆21Updated last year
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Genomic data interpretation and visualization Workshop☆21Updated this week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- ☆21Updated this week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆37Updated last week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆32Updated 3 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Variant catalogue pipeline