pinellolab / CRISPR-SURF
☆15Updated 4 months ago
Alternatives and similar repositories for CRISPR-SURF:
Users that are interested in CRISPR-SURF are comparing it to the libraries listed below
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- minimal pipeline for SPP and MACS2 peak calling plus secondary IDR analysis☆9Updated 8 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆47Updated 3 months ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- ☆29Updated 5 years ago
- ☆14Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆8Updated 9 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 5 months ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated last year
- GTEx analysis scripts☆20Updated 7 years ago
- simplified cellranger for long-read data☆17Updated 4 months ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆29Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year