Alternatives and similar repositories for guideseq:

Users that are interested in guideseq are comparing it to the libraries listed below

• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆46Updated last year
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆81Updated 4 months ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated 11 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆77Updated last year
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆40Updated 2 months ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆22Updated last week
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 6 months ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆72Updated last year
• nloyfer / UXM_deconv
  ☆40Updated 2 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆57Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆36Updated 3 years ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆35Updated 9 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆37Updated 2 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆28Updated 3 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆42Updated 2 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 8 months ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆23Updated this week
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆55Updated 3 years ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆30Updated last month
• kundajelab / idr
  IDR
  ☆31Updated last year
• Xinglab / espresso
  ☆58Updated 5 months ago
• tseemann / PEAR
  Pair-End AssembeR
  ☆29Updated 10 years ago
• developerpiru / BEAVR
  BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
  ☆24Updated 2 years ago
• cnobles / iGUIDE
  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…
  ☆21Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆79Updated 11 months ago
• tsailabSJ / circleseq
  ☆22Updated 6 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆54Updated 2 years ago