Alternatives and similar repositories for guideseq

Users that are interested in guideseq are comparing it to the libraries listed below

• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 3 months ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆37Updated 4 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆91Updated 2 weeks ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆44Updated 2 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆63Updated 10 months ago
• WubingZhang / MAGeCKFlute
  Integrative analysis pipeline for pooled CRISPR functional genetic screens
  ☆30Updated last year
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆43Updated 2 months ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆26Updated 3 weeks ago
• BioinfoUNIBA / REDItools2
  ☆59Updated 3 years ago
• cnobles / iGUIDE
  Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…
  ☆21Updated last month
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆30Updated 3 years ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆25Updated last month
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 4 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆21Updated last year
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆81Updated last week
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆26Updated 4 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated this week
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 3 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 10 months ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆35Updated 2 years ago
• rajewsky-lab / find_circ2
  Find circRNAs in RNA-seq data.
  ☆14Updated 8 years ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆70Updated last year
• Xinglab / espresso
  ☆61Updated 10 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆41Updated 3 weeks ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated last year
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago