Nanopore data analysis in R
☆41Jul 24, 2023Updated 3 years ago
Alternatives and similar repositories for NanoR
Users that are interested in NanoR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 7 months ago
- ☆37Oct 7, 2026Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Feb 24, 2020Updated 6 years ago
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated last year
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts and programs for the Holt Lab's MinION desktop☆32Nov 18, 2020Updated 5 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Jul 23, 2025Updated last year
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated 2 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- DMRs detection, annotation and analysis☆10Jan 19, 2026Updated 9 months ago
- Plotting tools for nanopore methylation data☆96Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆29Oct 17, 2023Updated 3 years ago
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated last month
- ☆14May 12, 2023Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Dec 15, 2020Updated 5 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated 2 months ago
- ☆35Feb 20, 2020Updated 6 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆112Jun 15, 2026Updated 4 months ago
- ☆10Oct 21, 2019Updated 7 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Jan 18, 2021Updated 5 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- ☆20Apr 13, 2022Updated 4 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Aggregate modified-base calls from BAM files into bedMethyl for downstream methylation analysis☆53Sep 27, 2025Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Mar 13, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- ATAC-seq snakemake pipeline☆90Feb 13, 2020Updated 6 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- ☆46Jul 6, 2017Updated 9 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- ☆16Aug 3, 2018Updated 8 years ago
- a toolkit for working with Oxford nanopore data☆243Feb 6, 2023Updated 3 years ago