compbiolabucf / AS-QuantLinks
Quantitation and visualization of differential alternative splicing events
☆11Updated 2 years ago
Alternatives and similar repositories for AS-Quant
Users that are interested in AS-Quant are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- ☆64Updated 3 months ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated last month
- Tutorial Website☆61Updated 4 years ago
- ☆60Updated 5 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- ☆49Updated 2 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆24Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Allele-specific alignment sorting☆61Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆21Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago