compbiolabucf / AS-Quant
Quantitation and visualization of differential alternative splicing events
☆10Updated last year
Alternatives and similar repositories for AS-Quant:
Users that are interested in AS-Quant are comparing it to the libraries listed below
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated 2 weeks ago
- Tutorial Website☆56Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- ATAC-seq processing pipeline☆32Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆12Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆22Updated last year
- A list of alternative splicing analysis resources☆42Updated 3 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- RNA editing tests☆16Updated 4 years ago
- ☆54Updated 3 years ago
- Tools for analyzing DNA methylation data☆36Updated last week
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆49Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- ☆30Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- ☆40Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- ☆16Updated 6 months ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆21Updated 9 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago