rrwick / MinION-desktop
Scripts and programs for the Holt Lab's MinION desktop
☆32Updated 4 years ago
Alternatives and similar repositories for MinION-desktop:
Users that are interested in MinION-desktop are comparing it to the libraries listed below
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆31Updated 10 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Simple pileup-based variant caller☆88Updated last month
- UCSC Nanopore☆43Updated 5 years ago
- Synteny Imager☆60Updated 6 months ago
- ☆29Updated 4 years ago
- Predict 5mC in PacBio HiFi reads☆1Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated last year
- Error correction of ONT transcript reads☆59Updated last year
- A battery of methylation tools for PacBio HiFi reads☆31Updated 2 weeks ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 4 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- ☆47Updated 7 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 4 months ago