rrwick / MinION-desktop
Scripts and programs for the Holt Lab's MinION desktop
☆32Updated 4 years ago
Alternatives and similar repositories for MinION-desktop:
Users that are interested in MinION-desktop are comparing it to the libraries listed below
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- ☆31Updated last year
- Synteny Imager☆61Updated 8 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆48Updated 5 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 2 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- ☆39Updated 3 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆77Updated 9 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- A local-haplotagging-based small and structural variant caller☆74Updated last week
- Simple pileup-based variant caller☆89Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆72Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- ☆46Updated 8 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆34Updated 2 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago