A catalogue of available long read sequencing data analysis tools
☆91Aug 31, 2026Updated last week
Alternatives and similar repositories for long_read_tools
Users that are interested in long_read_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Long read production pipelines☆151Updated this week
- ☆27Aug 4, 2026Updated last month
- Pre-mAsking Long reads for Mobile Element inseRtion☆21Jul 24, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- ☆11Sep 5, 2018Updated 8 years ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Yet another k-mer analyzer☆174Dec 30, 2025Updated 8 months ago
- A flexible processor for sequencing reads☆26Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Aug 28, 2026Updated last week
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 2 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Fast and accurate de novo assembler for long reads☆406May 10, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- Visualizing transcript structure and annotation using ggplot2☆170Aug 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆525May 20, 2026Updated 3 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆13Oct 30, 2024Updated last year
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Long Reads Annotation pipeline☆71Mar 31, 2022Updated 4 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 4 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆56Feb 6, 2024Updated 2 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated last year