A catalogue of available long read sequencing data analysis tools
☆92Nov 2, 2026Updated this week
Alternatives and similar repositories for long_read_tools
Users that are interested in long_read_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Long read production pipelines☆152Updated this week
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- ☆11Sep 5, 2018Updated 8 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆85Mar 3, 2025Updated last year
- Plotting scripts for long read sequencing data☆564Oct 1, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Updated this week
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- ☆16May 21, 2026Updated 5 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆282Sep 26, 2023Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆39May 25, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago
- PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies☆10Jun 14, 2026Updated 4 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆25Feb 22, 2026Updated 8 months ago
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- ☆27Oct 1, 2026Updated last month
- CAMITAX: Taxon labels for microbial genomes☆32Dec 14, 2023Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆408May 10, 2024Updated 2 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,267May 19, 2026Updated 5 months ago
- Assembly topology from long-read alignments☆10Jul 24, 2026Updated 3 months ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Long read / genome alignment software☆332Dec 16, 2025Updated 10 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Yet another k-mer analyzer☆179Dec 30, 2025Updated 10 months ago
- A flexible processor for sequencing reads☆26Updated this week
- ☆29Sep 28, 2024Updated 2 years ago
- quality filtering tool for long reads☆423Sep 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A genome alignment and visualization system☆10Apr 30, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆20Oct 29, 2019Updated 7 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Oct 7, 2026Updated last month
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Explore GFF files with an AI agent version of the gffutils Python library.☆11Sep 28, 2026Updated last month
- Visualization tool for (meta)genome assembly graphs☆50Updated this week