mritchielab / long_read_toolsLinks
A catalogue of available long read sequencing data analysis tools
☆78Updated 2 months ago
Alternatives and similar repositories for long_read_tools
Users that are interested in long_read_tools are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- ☆39Updated 3 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆41Updated last month
- web documentation for Trinotate☆48Updated 2 years ago
- Simple pileup-based variant caller☆90Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 6 months ago
- ☆35Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆48Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 4 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Maximum likelihood demultiplexing☆47Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- A collection of command line tools for working with sequencing data☆51Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Nanopore data analysis in R☆40Updated last year
- python plotly Circos from VCF☆36Updated 11 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated 2 months ago