mritchielab / long_read_toolsLinks
A catalogue of available long read sequencing data analysis tools
☆78Updated 2 weeks ago
Alternatives and similar repositories for long_read_tools
Users that are interested in long_read_tools are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 9 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- ☆35Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆78Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Merging paired-end reads and removing adapters☆46Updated 6 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated 3 weeks ago
- Nanopore data analysis in R☆40Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆91Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- my bin directory☆45Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- Evolutionary Transcriptomics with R☆45Updated 2 weeks ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated 3 months ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated last month
- A collection of command line tools for working with sequencing data☆51Updated 3 weeks ago