nanoporetech / ont_tutorial_basicqcLinks
A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
☆31Updated 5 years ago
Alternatives and similar repositories for ont_tutorial_basicqc
Users that are interested in ont_tutorial_basicqc are comparing it to the libraries listed below
Sorting:
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- ☆30Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆49Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 11 months ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Structural variant caller☆55Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- my bin directory☆45Updated 4 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 3 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- ☆83Updated 10 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago