Alternatives and similar repositories for denbi-nanopore-training

Users that are interested in denbi-nanopore-training are comparing it to the libraries listed below

• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 4 years ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆44Updated 4 years ago
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆53Updated 2 years ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• marbl / harvest
  ☆52Updated 4 years ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆49Updated 3 years ago
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 4 years ago
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆40Updated 4 years ago
• phac-nml / sistr_cmd
  SISTR (Salmonella In Silico Typing Resource) command-line tool
  ☆28Updated last month
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆67Updated 7 years ago
• LomanLab / EBAME18
  Long read metagenomics practical at EBAME18
  ☆18Updated 6 years ago
• bvalot / pyMLST
  whole genome MLST analysis
  ☆43Updated 2 months ago
• microgenlab / porefile
  A Nextflow full-length 16S profiling pipeline for ONT reads
  ☆25Updated last year
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 6 months ago
• Psy-Fer / fast5_fetcher
  A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…
  ☆14Updated 6 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• katholt / RedDog
  ☆36Updated 3 years ago
• tseemann / sixess
  🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
  ☆24Updated 7 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 9 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆42Updated 2 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆27Updated 5 months ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• simonrharris / SKA
  Split Kmer Analysis
  ☆65Updated 3 years ago
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆24Updated last month