wdecoster / nano-snakemakeLinks
A snakemake pipeline for SV analysis from nanopore genome sequencing
☆51Updated 5 years ago
Alternatives and similar repositories for nano-snakemake
Users that are interested in nano-snakemake are comparing it to the libraries listed below
Sorting:
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Structural Variant Index☆74Updated 6 months ago
- Structural variant caller☆54Updated 3 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ☆49Updated 7 months ago
- ☆39Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ☆51Updated 5 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆80Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- UCSC Nanopore☆43Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 11 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Combined de novo transcriptome assembly - multiple assemblers - multiple parameters☆18Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago