wdecoster / nano-snakemakeLinks
A snakemake pipeline for SV analysis from nanopore genome sequencing
☆51Updated 5 years ago
Alternatives and similar repositories for nano-snakemake
Users that are interested in nano-snakemake are comparing it to the libraries listed below
Sorting:
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Tools for the analysis of structural variation in genomes☆80Updated last year
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 7 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Structural Variant Index☆75Updated 7 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- ☆49Updated 9 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ☆39Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆29Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago