wdecoster / nano-snakemakeLinks
A snakemake pipeline for SV analysis from nanopore genome sequencing
☆51Updated 5 years ago
Alternatives and similar repositories for nano-snakemake
Users that are interested in nano-snakemake are comparing it to the libraries listed below
Sorting:
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆81Updated 7 months ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Structural Variant Index☆75Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- ☆49Updated 11 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Structural variant merging tool☆55Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- ☆30Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Genome Annotation Without Nightmares☆46Updated 9 months ago
- ☆51Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago