wdecoster / nano-snakemakeLinks
A snakemake pipeline for SV analysis from nanopore genome sequencing
☆51Updated 5 years ago
Alternatives and similar repositories for nano-snakemake
Users that are interested in nano-snakemake are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆48Updated 6 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural Variant Index☆74Updated 5 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ☆51Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- ☆80Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆104Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago