cremi / cremi_pythonLinks
Python scripts to read and write the CREMI hdf5 file format.
☆38Updated 2 years ago
Alternatives and similar repositories for cremi_python
Users that are interested in cremi_python are comparing it to the libraries listed below
Sorting:
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 8 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆69Updated 2 years ago
- ☆21Updated 4 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated last month
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆73Updated 3 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ☆17Updated 7 years ago
- 🌈☆59Updated 3 months ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆49Updated last year
- ☆29Updated last year
- Computes vesselness scores for 3-dimensional images.☆71Updated 8 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- ☆16Updated 8 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- Implementation of the DeepVesselNet deep learning network☆151Updated 2 years ago
- (This repo is no longer up-to-date. Any updates will be at https://github.com/DeepRegNet/DeepReg/) A demo of the re-factored label-driven…☆123Updated 6 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 10 months ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆52Updated last year
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MI…☆51Updated 2 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Cerebrovascular Image Analysis - (Matlab) Toolkit☆24Updated 2 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆117Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated 3 weeks ago
- ☆53Updated 6 years ago
- Python implementation of 2d and 3d image registration☆33Updated 3 years ago