Python scripts to read and write the CREMI hdf5 file format.
☆39Mar 21, 2023Updated 3 years ago
Alternatives and similar repositories for cremi_python
Users that are interested in cremi_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- ☆22Jan 6, 2026Updated 9 months ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- Aligner for large scale serial section image data☆20Jul 7, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆16Apr 13, 2019Updated 7 years ago
- Simple watershed and agglomeration library for affinity graphs.☆31Oct 6, 2026Updated 3 weeks ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Feb 28, 2018Updated 8 years ago
- Codes for 'Learning Probabilistic Topological Representations Using Discrete Morse Theory'☆16Sep 19, 2023Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- Conversion of neuroimaging data for display in Neuroglancer☆31Aug 19, 2026Updated 2 months ago
- Synaptic Partner Detection in 3D Microscopy Volumes☆10Apr 29, 2022Updated 4 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆29Nov 21, 2013Updated 12 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🌈☆70Oct 10, 2025Updated last year
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆11Feb 9, 2021Updated 5 years ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆29Updated this week
- ☆12Mar 25, 2022Updated 4 years ago
- A set of tools for elastic image registration in Julia☆11Oct 4, 2018Updated 8 years ago
- Render transformed image tiles☆37Updated this week
- ☆17Mar 26, 2024Updated 2 years ago
- ☆10Jan 7, 2020Updated 6 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆202Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Unified Deep Learning Framework for ssTEM Image Restoration☆14Jul 27, 2022Updated 4 years ago
- Automatic segmentation of electron microscopy volumes☆80Jan 15, 2021Updated 5 years ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆129Updated this week
- ☆16Nov 2, 2016Updated 9 years ago
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆84Feb 19, 2024Updated 2 years ago
- Domain Adaptive Mitochondria Segmentation via Enforcing Inter-Section Consistency☆16Jul 16, 2023Updated 3 years ago
- Another implementation of topological loss☆37May 12, 2021Updated 5 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Aug 28, 2018Updated 8 years ago
- DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory☆48Sep 19, 2023Updated 3 years ago
- ☆11Jun 11, 2020Updated 6 years ago
- A basic loader of HDF5 files into SciDB☆15Dec 12, 2013Updated 12 years ago
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago
- Topological features applied to the digits dataset☆10Updated this week
- WebGL-based viewer for volumetric data☆25Updated this week