cremi / cremi_pythonLinks
Python scripts to read and write the CREMI hdf5 file format.
☆38Updated 2 years ago
Alternatives and similar repositories for cremi_python
Users that are interested in cremi_python are comparing it to the libraries listed below
Sorting:
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 6 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆68Updated 2 years ago
- ☆20Updated 4 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 3 years ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- ☆17Updated 7 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆71Updated 3 years ago
- 🌈☆56Updated 2 months ago
- Aligner for large scale serial section image data☆16Updated last year
- ☆16Updated 8 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆56Updated last week
- ☆29Updated last year
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 9 months ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- Computes vesselness scores for 3-dimensional images.☆70Updated 8 years ago
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- Very fast greedy diffeomorphic registration code☆77Updated 3 weeks ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- ☆73Updated last month
- Library for automatic tracking of microtubules in large scale EM datasets.☆9Updated 2 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Implementation of the DeepVesselNet deep learning network☆149Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated this week