Alternatives and similar repositories for SegEM:

Users that are interested in SegEM are comparing it to the libraries listed below

• divelab / deepem3d
  ☆18Updated 7 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 3 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 3 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 6 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 7 months ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆35Updated 5 months ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆64Updated 5 years ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆12Updated 5 years ago
• CellTrackingChallenge / CTC-FijiPlugins
  [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.
  ☆10Updated 3 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆64Updated 3 years ago
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 6 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆26Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆51Updated last week
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆66Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆38Updated 3 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated 2 years ago
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆30Updated last year
• BigNeuron / Data
  ☆16Updated 8 years ago
• janelia-flyem / NeuroProof
  Tool for graph-based image segmentation and analysis
  ☆21Updated 7 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆76Updated 4 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• sciai-lab / pytorch-LearnedRandomWalker
  Pytorch implementation of the LearnedRandomWalker module
  ☆29Updated 4 years ago
• klasma / BaxterAlgorithms
  Software for segmentation, tracking and analysis of cells in microscope image sequences.
  ☆40Updated 10 months ago
• Rhoana / rhoana
  Rhoana - Dense Automated Neuron Annotation pipeline
  ☆28Updated 7 years ago
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago