Semi automated image analysis toolkit for Connectomics
☆12Aug 21, 2019Updated 6 years ago
Alternatives and similar repositories for SegEM
Users that are interested in SegEM are comparing it to the libraries listed below
Sorting:
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆15Apr 13, 2019Updated 6 years ago
- Pytorch 0.41 implementation of the U-Net for image semantic segmentation + Dataloader for ISBI 2012 Challenge☆14Jul 15, 2020Updated 5 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 7 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- ☆22Jan 6, 2026Updated last month
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- Cyclic Guidance for Weakly Supervised Joint Detection and Segmentation☆20Mar 14, 2020Updated 5 years ago
- Awesome autoregressive vision foundation models☆25Dec 24, 2024Updated last year
- First-order optimization tools☆25Oct 2, 2023Updated 2 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.☆28Sep 18, 2025Updated 5 months ago
- Automatic segmentation of electron microscopy volumes☆78Jan 15, 2021Updated 5 years ago
- [ACM MM2019] Learning Semantics-aware Distance Map with Semantics Layering Network for Amodal Instance Segmentation☆32Sep 3, 2020Updated 5 years ago
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 8 years ago
- ☆13Jun 27, 2025Updated 8 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 2 years ago
- ☆11Nov 24, 2025Updated 3 months ago
- Blender application template simulating degrees of freedom in a focused ion beam system☆10Sep 3, 2021Updated 4 years ago
- ☆11Jun 11, 2020Updated 5 years ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated last month
- Interactive electron optical simulation of a TEM☆11Nov 24, 2025Updated 3 months ago
- Repository for the code of the simplex non-negative matrix factorization algorithm for EDXS data☆14Feb 6, 2025Updated last year
- From our paper "OSMO: Online Specific Models for Occlusion in Multiple Object Tracking under Surveillance Scene" in ACM Multimedia 2018.☆11Apr 9, 2019Updated 6 years ago
- ☆12Feb 5, 2026Updated 3 weeks ago
- A program interfacing Segment Anything with cryoSPARC via cryosparc-tools to efficiently identify vesicle-embedded membrane proteins and …☆12Feb 18, 2025Updated last year
- This is the project that we did for the Computer Vision course at Stony Brook University. It is a learning based method where the number …☆10Dec 20, 2014Updated 11 years ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated 3 weeks ago
- Matlab code for fast Hausdorff distance for binary images or segmentation maps☆11Mar 10, 2019Updated 6 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- Browser-based GUI HDF Viewer https://broh5.readthedocs.io☆13Dec 26, 2025Updated 2 months ago
- Weakly Supervised Cell Instance Segmentation by Propagating from Detection Response, in MICCAI2019.☆43Dec 9, 2020Updated 5 years ago
- 《统计学习方法_李航》每章算法的具体实现(不依赖与其他库)☆11Feb 20, 2017Updated 9 years ago
- Denoise event-based camera data based on correlation.☆10Mar 27, 2022Updated 3 years ago
- A software library for segmenting and measuring sediment particles in images☆18Feb 17, 2026Updated last week
- ☆12Mar 18, 2024Updated last year
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Nov 19, 2025Updated 3 months ago
- Virtually tilt TEM samples☆10May 27, 2024Updated last year
- A GPU and CPU accelerated python package for aligning tomography datasets.☆15Oct 15, 2025Updated 4 months ago