Alternatives and similar repositories for SegEM

Users that are interested in SegEM are comparing it to the libraries listed below

• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 9 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 months ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆13Updated 6 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆70Updated 2 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• CellTrackingChallenge / CTC-FijiPlugins
  [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.
  ☆10Updated 3 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated last year
• betaseg / cellsketch
  ☆10Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 3 weeks ago
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆34Updated 2 years ago
• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 5 years ago
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 3 years ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆14Updated 9 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• unidesigner / groundtruth-drosophila-vnc
  Segmented anisotropic ssTEM dataset of neural tissue
  ☆24Updated 11 years ago
• mhaft / DeepVess
  ☆29Updated last year
• Rhoana / rhoana
  Rhoana - Dense Automated Neuron Annotation pipeline
  ☆28Updated 8 years ago
• juglab / DenoiSeg
  Joint training of denoising and segmentation.
  ☆74Updated 2 years ago
• faustomilletari / 3D-Caffe
  ☆66Updated 8 years ago