Semi automated image analysis toolkit for Connectomics
☆12Aug 21, 2019Updated 6 years ago
Alternatives and similar repositories for SegEM
Users that are interested in SegEM are comparing it to the libraries listed below
Sorting:
- First-order optimization tools☆25Oct 2, 2023Updated 2 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆15Apr 13, 2019Updated 6 years ago
- scripts for using spark on janelia's cluster☆13Nov 12, 2023Updated 2 years ago
- Pytorch 0.41 implementation of the U-Net for image semantic segmentation + Dataloader for ISBI 2012 Challenge☆14Jul 15, 2020Updated 5 years ago
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 8 years ago
- Simple watershed and agglomeration library for affinity graphs.☆29Sep 18, 2025Updated 6 months ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Cyclic Guidance for Weakly Supervised Joint Detection and Segmentation☆20Mar 14, 2020Updated 6 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Dec 2, 2025Updated 3 months ago
- ☆22Jan 6, 2026Updated 2 months ago
- MD DaVis: A python package to analyze molecular dynamics trajectories of proteins☆17Feb 17, 2025Updated last year
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- Awesome autoregressive vision foundation models☆26Dec 24, 2024Updated last year
- Generative Adversarial Network for Tree Structured Data☆21Dec 12, 2018Updated 7 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Where is __pyx_capi__?☆14Feb 15, 2018Updated 8 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- Interactive Learning and Segmentation Toolkit☆23Aug 10, 2012Updated 13 years ago
- Automatic segmentation of electron microscopy volumes☆78Jan 15, 2021Updated 5 years ago
- [ACM MM2019] Learning Semantics-aware Distance Map with Semantics Layering Network for Amodal Instance Segmentation☆32Sep 3, 2020Updated 5 years ago
- ☆15Jan 19, 2024Updated 2 years ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 4 months ago
- A curated list of awesome projects related to Google's Material Design Components☆19Nov 2, 2018Updated 7 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- From our paper "OSMO: Online Specific Models for Occlusion in Multiple Object Tracking under Surveillance Scene" in ACM Multimedia 2018.☆11Apr 9, 2019Updated 6 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Nov 19, 2025Updated 4 months ago
- Extract regions of interest based on correlated pixel intensity☆24May 9, 2017Updated 8 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.☆33Updated this week
- Pipeline for putting surface meshes into correspondence☆26Jan 30, 2023Updated 3 years ago
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- ☆11Jun 11, 2020Updated 5 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 2 years ago
- ☆12Mar 25, 2022Updated 3 years ago
- 《统计学习方法_李航》每章算法的具体实现(不依赖与其他库)☆11Feb 20, 2017Updated 9 years ago
- English documentation for NodeBB☆15Oct 1, 2020Updated 5 years ago