BigNeuron / Code_and_Analysis_ToolsLinks
☆12Updated 3 years ago
Alternatives and similar repositories for Code_and_Analysis_Tools
Users that are interested in Code_and_Analysis_Tools are comparing it to the libraries listed below
Sorting:
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- 3-D imaging visualisation through slicing☆29Updated 4 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- https://nutil.readthedocs.io/en/latest/☆12Updated last month
- ☆45Updated 5 years ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 7 months ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- Dendritic Spine Analysis Software☆13Updated 2 years ago
- ☆36Updated 3 years ago
- Keras network for spike detection from calcium traces☆12Updated 4 years ago
- Repository for collecting materials from nwb hackathons☆24Updated 3 weeks ago
- ☆8Updated 3 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- Software package for neuron reconstruction and visualization☆38Updated last week
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 5 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- ☆17Updated 2 years ago
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆12Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆49Updated 2 weeks ago