BigNeuron / Code_and_Analysis_ToolsLinks
☆12Updated 3 years ago
Alternatives and similar repositories for Code_and_Analysis_Tools
Users that are interested in Code_and_Analysis_Tools are comparing it to the libraries listed below
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆143Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- 3-D imaging visualisation through slicing☆31Updated last year
- Repository for collecting materials from nwb hackathons☆24Updated 2 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- ☆41Updated 4 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆33Updated 3 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Updated 6 years ago
- Keras network for spike detection from calcium traces☆12Updated 5 years ago
- motion correction☆17Updated 2 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Deconvolution of calcium imaging data☆104Updated last year
- https://nutil.readthedocs.io/en/latest/☆13Updated 2 months ago
- ☆17Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Software package for neuron reconstruction and visualization☆40Updated 7 months ago
- Analysis package for miniscope data☆14Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Updated 6 years ago
- Segmentation of anatomical structures in a common coordinate space☆35Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- A Python interface to access neuroanatomical atlases☆170Updated this week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago