billkarsh / Alignment_ProjectsLinks
Aligner for large scale serial section image data
☆16Updated 2 years ago
Alternatives and similar repositories for Alignment_Projects
Users that are interested in Alignment_Projects are comparing it to the libraries listed below
Sorting:
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated last month
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- www.vaa3d.org☆113Updated last year
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆36Updated 3 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Updated 3 months ago
- GPU accelerated 3D image deconvolution using CUDA☆39Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆57Updated 6 months ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆14Updated 6 years ago
- TensorFlow Deconvolution for Microscopy Data☆91Updated 3 years ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Updated last year
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated last month
- Resources for Heinrich et al., 2021☆19Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- 2D image registration in python, using napari.☆16Updated 4 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- www.vaa3d.org☆80Updated 7 years ago
- ☆40Updated 5 years ago
- A library to facilitate machine learning on multi-dimensional images.☆87Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.☆26Updated 3 months ago
- Distributed segmentation for bio-image-analysis☆40Updated 7 months ago
- A Fiji plugin for Curvature Analysis.☆13Updated 5 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago