billkarsh / Alignment_Projects
Aligner for large scale serial section image data
☆15Updated last year
Alternatives and similar repositories for Alignment_Projects:
Users that are interested in Alignment_Projects are comparing it to the libraries listed below
- Distributed segmentation for bio-image-analysis☆37Updated 8 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 5 years ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆30Updated 2 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- A general illumination correction method for optical microscopy.☆39Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- Joint training of denoising and segmentation.☆70Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆54Updated 2 weeks ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆41Updated 6 months ago
- ☆20Updated 3 years ago
- Lattice light-sheet post-processing utility.☆28Updated 2 weeks ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- ☆18Updated 7 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 4 years ago
- Command line tool for registration of very large 3D volumes.☆13Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆20Updated 4 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆36Updated 6 months ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆30Updated 5 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated 2 weeks ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated last week
- GPU accelerated 3D image deconvolution using CUDA☆35Updated 8 months ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- simple package for augmentation of n-dimensional arrays☆32Updated last year