celisun / Deep_learning_automated__neuron_segmentation
Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
☆17Updated 7 years ago
Alternatives and similar repositories for Deep_learning_automated__neuron_segmentation:
Users that are interested in Deep_learning_automated__neuron_segmentation are comparing it to the libraries listed below
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- ☆18Updated 7 years ago
- ☆20Updated 4 years ago
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Segmented anisotropic ssTEM dataset of neural tissue☆24Updated 11 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 7 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆60Updated 5 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 3 years ago
- ☆16Updated 5 years ago
- Elastic Boundary Projection for 3D Medical Image Segmentation - CVPR 2019☆65Updated 5 years ago
- A manually annotated test set for DeepLesion with 3D lesion boxes☆24Updated 4 years ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆53Updated 5 years ago
- ☆15Updated 5 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation…☆55Updated 7 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆84Updated 5 years ago
- ☆14Updated 8 months ago
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- ☆53Updated 6 years ago
- Code for tutorial at MICCAI 2022☆93Updated last year
- ☆16Updated 8 years ago
- This repository aims at containing all the code employed at LIVIA to segment medical images. Mainly, our research focuses on bringind the…☆57Updated 7 years ago
- Implementation of the paper : https://arxiv.org/abs/1706.04737☆17Updated 6 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆70Updated 3 years ago