celisun / Deep_learning_automated__neuron_segmentationLinks
Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
☆17Updated 7 years ago
Alternatives and similar repositories for Deep_learning_automated__neuron_segmentation
Users that are interested in Deep_learning_automated__neuron_segmentation are comparing it to the libraries listed below
Sorting:
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Artery vein separation☆54Updated 2 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 5 years ago
- Weakly Supervised Mitosis Detection in Breast Histopathology Images using Concentric Loss☆25Updated 5 years ago
- Implementation of the nic_vicorob team for addressing the MICCAI Grand Challenge on 6-month infant brain MRI segmentation iSeg2017☆36Updated 7 years ago
- ☆53Updated 6 years ago
- Code for the MICCAI 2019 paper Balsiger et al., Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation☆19Updated 2 years ago
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Updated 7 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆85Updated 5 years ago
- Code for tutorial at MICCAI 2022☆94Updated last year
- Survival Convolutional Neural Networks☆68Updated 2 years ago
- code of DenseVoxNet and 3D-DSN☆89Updated 8 years ago
- Elastic Boundary Projection for 3D Medical Image Segmentation - CVPR 2019☆66Updated 6 years ago
- ☆17Updated 7 years ago
- Stain normalization parameters used in the paper "F. Ciompi et al., The importance of stain normalization in colorectal tissue classifica…☆28Updated 6 years ago
- ☆15Updated 6 years ago
- Axon/Myelin segmentation using Deep Learning☆122Updated 2 weeks ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 2 years ago
- Dataset: landmarks for registration of histology images☆33Updated 4 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- ☆21Updated 7 years ago
- MS lesion segmentation using cascaded 3D convolutional neural networks☆42Updated 7 years ago
- [TMI'19 & DLMIA'18] Code for "Multi-Task Deep Learning with Margin Ranking Loss for Lung Nodule Analysis".☆45Updated 4 years ago
- This repository aims at containing all the code employed at LIVIA to segment medical images. Mainly, our research focuses on bringind the…☆56Updated 7 years ago
- The following is a new architecture for robust segmentation. It may perform better than a U-Net :) for binary segmentation. I will update…☆25Updated 4 years ago
- This is supplementary material for the manuscript: "Semantic Segmentation of Pathological Lung Tissue with Dilated Fully Convolutional Ne…☆32Updated 7 years ago