Alternatives and similar repositories for Awesome-Neuron-Segmentation-in-EM-Images

Users that are interested in Awesome-Neuron-Segmentation-in-EM-Images are comparing it to the libraries listed below

• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆180Updated this week
• funkelab / lsd
  🌈
  ☆66Updated last month
• ilastik / nature_methods_multicut_pipeline
  ☆22Updated 4 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆74Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆39Updated 2 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆174Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 2 months ago
• uncbiag / mermaid
  Image registration using pytorch
  ☆184Updated last year
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆39Updated 3 years ago
• learn2reg / tutorials2019
  ☆195Updated 5 years ago
• giesekow / deepvesselnet
  Implementation of the DeepVesselNet deep learning network
  ☆152Updated 2 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆32Updated 2 years ago
• MIC-DKFZ / napari-nninteractive
  ☆101Updated last month
• balbasty / nitorch
  Neuroimaging in PyTorch
  ☆100Updated 2 weeks ago
• mhaft / DeepVess
  ☆29Updated last year
• MIC-DKFZ / napari-sam
  ☆242Updated last year
• neel-dey / AnyStar
  [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation
  ☆17Updated 2 months ago
• Borda / BIRL
  BIRL: Benchmark on Image Registration methods with Landmark validations
  ☆93Updated 3 years ago
• neel-dey / Atlas-GAN
  [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates
  ☆50Updated 2 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆52Updated last year
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆39Updated 2 months ago
• unidesigner / groundtruth-drosophila-vnc
  Segmented anisotropic ssTEM dataset of neural tissue
  ☆25Updated 12 years ago
• HiLab-git / SimpleCRF
  matlab and python wrap of crf and dense crf, both 2d and 3d are supported
  ☆170Updated 3 years ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆15Updated last year
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 3 years ago
• rohitrango / FireANTs
  Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration
  ☆62Updated 3 weeks ago
• gvtulder / elasticdeform
  Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).
  ☆193Updated 9 months ago
• divelab / deepem3d
  ☆17Updated 7 years ago