subeeshvasu / Awesome-Neuron-Segmentation-in-EM-ImagesLinks
A curated list of resources for 3D segmentation of neurites in EM images
☆55Updated last year
Alternatives and similar repositories for Awesome-Neuron-Segmentation-in-EM-Images
Users that are interested in Awesome-Neuron-Segmentation-in-EM-Images are comparing it to the libraries listed below
Sorting:
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆187Updated last month
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆75Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- 🌈☆67Updated 3 months ago
- BIRL: Benchmark on Image Registration methods with Landmark validations☆94Updated 4 years ago
- an image registration/augmentation/segmentation package☆174Updated 3 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ☆22Updated 2 weeks ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Image registration using pytorch☆183Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆27Updated 4 months ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated last week
- Deep Learning for EM Connectomics☆16Updated 3 years ago
- Accepted by ISBI 2022 (Oral)☆39Updated 3 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆185Updated this week
- ☆30Updated last year
- GPU and CPU implementation of LDDMM image registration☆63Updated last year
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- Neuroimaging in PyTorch☆100Updated this week
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆104Updated 3 months ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆175Updated 2 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆109Updated 5 years ago
- Image-and-Spatial Transformer Networks☆112Updated 2 years ago
- Implementation of the DeepVesselNet deep learning network☆153Updated 2 years ago
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates☆50Updated 3 years ago
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆194Updated 11 months ago
- Joint training of denoising and segmentation.☆76Updated 2 years ago