subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images

Related projects: ⓘ

• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆171Updated last month
• funkelab / lsd
  🌈
  ☆52Updated last year
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆36Updated last year
• ilastik / nature_methods_multicut_pipeline
  ☆19Updated 3 years ago
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆166Updated last year
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆63Updated 3 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆19Updated 3 years ago
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆37Updated 2 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 6 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆65Updated last year
• abnan / DRMIME
  DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
  ☆43Updated 4 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆62Updated 3 years ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆10Updated 8 months ago
• shirgur / UMIS
  Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"
  ☆72Updated 3 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆30Updated last year
• BigNeuron / Data
  ☆16Updated 7 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆35Updated 3 weeks ago
• SteffenCzolbe / DeepSimRegistration
  ☆36Updated last year
• simongraham / dsf-cnn
  Dense Steerable Filter CNN
  ☆74Updated last year
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 3 years ago
• neel-dey / Atlas-GAN
  [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates
  ☆51Updated last year
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆48Updated 3 weeks ago
• mpicbg-csbd / structured_N2V
  Code for StructN2V method and experiments
  ☆23Updated 2 years ago
• kimvwijnen / geodesic_distance_transform
  (Geodesic) Distance Transform following Toivanen et al (1996)
  ☆22Updated 5 years ago
• mhaft / DeepVess
  ☆29Updated 5 months ago
• unidesigner / groundtruth-drosophila-vnc
  Segmented anisotropic ssTEM dataset of neural tissue
  ☆24Updated 10 years ago
• divelab / deepem3d
  ☆18Updated 6 years ago
• jw4hv / deepflash
  Supervised Predictive Medical Image Registration Model
  ☆91Updated 3 years ago