Alternatives and similar repositories for h01

Users that are interested in h01 are comparing it to the libraries listed below

• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆19Updated 3 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆157Updated this week
• ashapsoncoe / CREST
  Connectome Reconstruction and Exploration Simple Tool
  ☆19Updated last year
• funkelab / lsd
  🌈
  ☆60Updated 5 months ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 9 months ago
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆13Updated last year
• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆24Updated this week
• AllenInstitute / MicronsBinder
  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  ☆37Updated last year
• seung-lab / microviewer
  Multiplatform 3D numpy image browser based viewer with voxel painting.
  ☆15Updated 2 weeks ago
• navis-org / fafbseg-py
  Tools to work with the FlyWire connectome. Fully interoperable with navis.
  ☆14Updated 2 months ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 3 years ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated 2 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆53Updated this week
• JaneliaSciComp / SharkViewer
  SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.
  ☆24Updated 2 years ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated last month
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated last month
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 5 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆123Updated last week
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆98Updated this week
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• connectome-neuprint / neuprint-python
  Python client utilties for interacting with the neuPrint connectome analysis service
  ☆35Updated last week
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆18Updated this week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆86Updated last month
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• danionella / warpfield
  GPU-based 3D non-rigid volumetric registration
  ☆41Updated last week
• CAVEconnectome / MeshParty
  ☆38Updated this week