Alternatives and similar repositories for mutex-watershed

Users that are interested in mutex-watershed are comparing it to the libraries listed below

• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last month
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 8 months ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆33Updated 2 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 10 months ago
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆128Updated last month
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆116Updated last year
• yijingru / KG_Instance_Segmentation
  [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes
  ☆84Updated 5 years ago
• PeterJackNaylor / DRFNS
  This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…
  ☆53Updated 5 years ago
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆52Updated last year
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• juglab / DenoiSeg
  Joint training of denoising and segmentation.
  ☆74Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 2 months ago
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆12Updated 5 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆57Updated last month
• Limingxing00 / MitoEM2021-Challenge
  Accepted by ISBI 2022 (Oral)
  ☆39Updated 3 years ago
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆33Updated 3 weeks ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆114Updated this week
• arbellea / LSTM-UNet
  ☆85Updated 5 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated last year
• nilsec / micron
  Library for automatic tracking of microtubules in large scale EM datasets.
  ☆9Updated 2 years ago