Alternatives and similar repositories for nifty:

Users that are interested in nifty are comparing it to the libraries listed below

• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated this week
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• knossos-project / knossos
  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…
  ☆74Updated last month
• mbalatsko / opencv-rolling-ball
  Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
  ☆47Updated 2 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• pyimreg / python-register
  Linear and non-linear image registration methods, using scipy and numpy.
  ☆63Updated 12 years ago
• AdaptiveParticles / LibAPR
  Library for producing and processing on the Adaptive Particle Representation (APR).
  ☆48Updated last month
• martinsch / pgmlink
  pgmLink - A Tracking-by-Assignment Software
  ☆16Updated 8 years ago
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆30Updated 9 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated 2 weeks ago
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated this week
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆15Updated 3 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated 2 weeks ago
• william-silversmith / countless
  Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-down…
  ☆10Updated 5 years ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated last year
• fiji / bUnwarpJ
  ImageJ/Fiji plugin for consistent elastic registration of 2D images
  ☆23Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆41Updated 3 years ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆123Updated 3 weeks ago
• path-openings / RORPO
  Ranking Operator Response of Path Openings
  ☆28Updated last year
• bobpepin / YacuDecu
  GPU Deconvolution Library with C and Matlab API for nVidia GPUs
  ☆21Updated 6 years ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 5 months ago
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 4 years ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆20Updated 2 months ago