janelia-flyem / NeuroProof
Tool for graph-based image segmentation and analysis
☆21Updated 7 years ago
Alternatives and similar repositories for NeuroProof:
Users that are interested in NeuroProof are comparing it to the libraries listed below
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- Simple watershed and agglomeration library for affinity graphs.☆20Updated 4 months ago
- Automatic segmentation of electron microscopy volumes☆76Updated 4 years ago
- ☆20Updated 3 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 7 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆47Updated this week
- Software package for neuron reconstruction and visualization☆38Updated 11 months ago
- Distributed segmentation for bio-image-analysis☆37Updated 8 months ago
- benchmarking challenge for finding neurons in imaging data☆73Updated 5 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆38Updated 3 years ago
- WebGL-based viewer for volumetric data☆23Updated this week
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆64Updated 5 years ago
- ☆40Updated 5 years ago
- Brain image registration package☆31Updated 8 years ago
- Biomedical Visualization and Analysis Framework☆41Updated last year
- Segment 3D MRIs of the brain into anatomical regions☆37Updated 10 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆41Updated 8 months ago
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19Updated last year
- Cython based wrapper for IRTK☆10Updated 9 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆36Updated 6 months ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago