Alternatives and similar repositories for NeuroProof

Users that are interested in NeuroProof are comparing it to the libraries listed below

• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated 2 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• Rhoana / rhoana
  Rhoana - Dense Automated Neuron Annotation pipeline
  ☆28Updated 8 years ago
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 7 months ago
• ELEKTRONN / ELEKTRONN
  A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
  ☆38Updated 3 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆49Updated this week
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• adbrebs / brain_segmentation
  Segment 3D MRIs of the brain into anatomical regions
  ☆36Updated 10 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• jeanfeydy / lddmm-ot
  MICCAI 2017 Paper - Optimal Transport for Diffeomorphic Registration
  ☆55Updated 6 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 9 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• BioMedIA / python-irtk
  Cython based wrapper for IRTK
  ☆10Updated 9 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• BigNeuron / BigNeuron-Wiki
  Documentations of BigNeuron Project progress
  ☆24Updated 9 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆41Updated last year
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• qureai / Multi-Atlas-Segmentation
  Multi Atlas Segmentation of brain anatomy using ANTs
  ☆31Updated 8 years ago
• TJKlein / DeepNAT
  ☆19Updated 8 years ago
• KitwareMedical / pyLAR
  This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…
  ☆23Updated 8 years ago
• juliabuhmann / syntist
  Train scripts for the automated detection of synaptic partners in Electron Microscopy brain data
  ☆9Updated 6 years ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆12Updated 5 years ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• nipy / nireg
  Brain image registration package
  ☆31Updated 9 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago