janelia-flyem / NeuroProofLinks
Tool for graph-based image segmentation and analysis
☆21Updated 8 years ago
Alternatives and similar repositories for NeuroProof
Users that are interested in NeuroProof are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆77Updated 4 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Automatic segmentation of electron microscopy volumes☆30Updated 13 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Matlab implementation of continuous max flow variants☆21Updated 9 years ago
- Predictive Image Registration☆140Updated 6 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Updated 3 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆339Updated last week
- Biomedical Visualization and Analysis Framework☆43Updated last year
- The Image Registration Toolkit☆83Updated 7 years ago
- Segment 3D MRIs of the brain into anatomical regions☆36Updated 10 years ago
- A curated list of awesome deep learning applications in the field of neurological image analysis☆151Updated 7 years ago
- ☆15Updated 9 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- Axon/Myelin segmentation using Deep Learning☆123Updated last month
- Automated anatomical brain label/shape analysis software (+ website)☆154Updated 4 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.☆26Updated 2 months ago
- Brain image registration package☆31Updated 9 years ago
- Official SuperElastix repository☆88Updated 6 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 8 years ago
- MICCAI 2017 Paper - Optimal Transport for Diffeomorphic Registration☆56Updated 6 years ago
- Dataset of head and neck CT scans and segmentations in NRRD format.☆99Updated 5 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago
- Cython based wrapper for IRTK☆10Updated 10 years ago
- GPU accelerated source code for motion compensation of multi-stack MRI data☆63Updated 5 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago
- Segment Deep Gray Matter on QSM images using 3D CNN☆19Updated 7 years ago