Alternatives and similar repositories for NeuroProof

Users that are interested in NeuroProof are comparing it to the libraries listed below

• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated 2 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 13 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆39Updated 2 years ago
• ELEKTRONN / ELEKTRONN
  A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
  ☆40Updated 3 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆43Updated last year
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆81Updated 7 years ago
• adbrebs / brain_segmentation
  Segment 3D MRIs of the brain into anatomical regions
  ☆36Updated 10 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 9 years ago
• rkwitt / quicksilver
  Predictive Image Registration
  ☆139Updated 6 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 2 months ago
• Rhoana / rhoana
  Rhoana - Dense Automated Neuron Annotation pipeline
  ☆28Updated 8 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆22Updated 4 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated last week
• jmerkow / I2I
  ☆10Updated 9 years ago
• InsightSoftwareConsortium / SimpleITKTutorialMICCAI2015
  SimpleITK tutorial at the 2015 MICCAI conference
  ☆23Updated 10 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆40Updated 5 months ago
• thefiddler / retinet
  ☆15Updated 9 years ago
• google / ffn
  Flood-Filling Networks for instance segmentation in 3d volumes.
  ☆339Updated last month
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆17Updated 4 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆29Updated 2 years ago
• axondeepseg / axondeepseg
  Axon/Myelin segmentation using Deep Learning
  ☆122Updated 2 weeks ago
• codeneuro / neurofinder
  benchmarking challenge for finding neurons in imaging data
  ☆74Updated 6 years ago
• nipy / mindboggle
  Automated anatomical brain label/shape analysis software (+ website)
  ☆153Updated 4 years ago
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆88Updated 6 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆25Updated 2 years ago
• emmanuelle / random_walker
  A collection of image segmentation algorithms based on diffusion methods
  ☆56Updated 5 years ago