Alternatives and similar repositories for NeuroProof

Users that are interested in NeuroProof are comparing it to the libraries listed below

• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated last year
• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆67Updated 2 years ago
• ELEKTRONN / ELEKTRONN
  A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
  ☆38Updated 3 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• Rhoana / biologicalgraphs
  Biologically-Constrained Graphs for Global Connectomics Reconstruction
  ☆10Updated 4 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 5 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆41Updated last year
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated 2 weeks ago
• adbrebs / brain_segmentation
  Segment 3D MRIs of the brain into anatomical regions
  ☆37Updated 10 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆41Updated 3 years ago
• BioMedIA / python-irtk
  Cython based wrapper for IRTK
  ☆10Updated 9 years ago
• janelia-flyem / NeuTu
  Software package for neuron reconstruction and visualization
  ☆38Updated last year
• divelab / deepem3d
  ☆17Updated 7 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 8 months ago
• KitwareMedical / pyLAR
  This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…
  ☆23Updated 8 years ago
• Rhoana / rhoana
  Rhoana - Dense Automated Neuron Annotation pipeline
  ☆28Updated 8 years ago
• BigNeuron / BigNeuron-Wiki
  Documentations of BigNeuron Project progress
  ☆24Updated 9 years ago
• mattiaspaul / OBELISK
  MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)
  ☆44Updated 5 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆80Updated 7 years ago
• nipy / nireg
  Brain image registration package
  ☆31Updated 8 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆23Updated this week
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago