Alternatives and similar repositories for gala:

Users that are interested in gala are comparing it to the libraries listed below

• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• TuragaLab / malis
  MALIS structured loss function for supervised learning of segmentation and clustering
  ☆18Updated last year
• janelia-flyem / NeuroProof
  Tool for graph-based image segmentation and analysis
  ☆21Updated 7 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆39Updated 3 years ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆36Updated 8 months ago
• pyimreg / python-register
  Linear and non-linear image registration methods, using scipy and numpy.
  ☆63Updated 12 years ago
• KitwareMedical / pyLAR
  This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…
  ☆22Updated 8 years ago
• DerThorsten / nifty
  A nifty library for graph based image segmentation.
  ☆44Updated last week
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 3 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆20Updated 3 months ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated last year
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• ELEKTRONN / ELEKTRONN
  A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)
  ☆38Updated 3 years ago
• divelab / deepem3d
  ☆18Updated 7 years ago
• CovertLab / DeepCell
  ☆49Updated 6 years ago
• CSBDeep / CSBDeep_website
  ☆40Updated 5 years ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆11Updated 5 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated this week
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆121Updated 3 months ago
• imodpasteur / ANNA-PALM
  Accelerating Single Molecule Localization Microscopy with Deep Learning
  ☆51Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆53Updated last month
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 3 years ago
• Fafa87 / cellstar
  Algorithm for round cells identification in the brightfield microscopy images.
  ☆21Updated last year
• CellCognition / cecog
  A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.
  ☆43Updated 8 months ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆54Updated last week
• blink1073 / tifffile
  Deprecated: Read and write image data from and to TIFF files.
  ☆61Updated 6 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago