Automatic segmentation of electron microscopy volumes
☆78Jan 15, 2021Updated 5 years ago
Alternatives and similar repositories for gala
Users that are interested in gala are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆30Oct 23, 2012Updated 13 years ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- ☆22Jan 6, 2026Updated 2 months ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 4 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated last year
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 6 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 7 months ago
- A curated list of resources for 3D segmentation of neurites in EM images☆56Mar 11, 2024Updated last year
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 2 years ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- This is the project that we did for the Computer Vision course at Stony Brook University. It is a learning based method where the number …☆10Dec 20, 2014Updated 11 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- ☆12Mar 25, 2022Updated 3 years ago
- The segraph library creates graphs from SLIC superpixels. It can be used for using CRF for image segmentation https://pypi.python.org/pyp…☆11Oct 9, 2020Updated 5 years ago
- ☆10Jun 9, 2023Updated 2 years ago
- ☆12Mar 24, 2023Updated 2 years ago
- A federated image segmentation method based on style transfer☆16Sep 28, 2024Updated last year
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- The code of the ProtoSeg for interpretation of segmentation maps☆16Jun 3, 2025Updated 9 months ago
- The mutex watershed for image segmentation.☆67May 6, 2021Updated 4 years ago
- 🌈☆67Oct 10, 2025Updated 4 months ago
- MSJsonKit是用于Objective-C的json序列化库,基于NSJSONSerialization和objc/runtime.h,可以实现Objective-C对象(包含自定义对象)与json字符串的相互转化☆13Dec 2, 2015Updated 10 years ago
- PyTorch code for Deep Extreme Level Set Evolution (CVPR 2019)☆69Jun 11, 2024Updated last year
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated 9 months ago
- Distributed segmentation for bio-image-analysis☆42Jan 18, 2026Updated last month
- Read and write Neuroglancer datasets programmatically.☆170Updated this week
- Extended version of the Berkeley Segmentation Benchmark [1] used for evaluation in [2].☆43Mar 28, 2019Updated 6 years ago
- Code for paper "Evidence fusion with contextual discounting for multi-modality medical image segmentation"☆18Oct 9, 2022Updated 3 years ago
- Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)☆82Apr 26, 2023Updated 2 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- A Python package for feature extraction of neural morphologies☆46Oct 20, 2025Updated 4 months ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆345Feb 25, 2026Updated last week
- Improving Semantic Image Segmentation with a Probabilistic Superpixel-based Dense Conditional Random Field☆24Jun 19, 2018Updated 7 years ago
- A nifty library for graph based image segmentation.☆47May 3, 2025Updated 10 months ago
- Seaborn-compatible API for interactive Vega-Lite plots via Altair☆21Sep 1, 2018Updated 7 years ago
- medInria super build.☆28Jan 3, 2018Updated 8 years ago
- This repository provides the official PyTorch implementation of the paper: MaskFactory: Towards High-quality Synthetic Data Generation Fo…☆32Feb 18, 2025Updated last year