janelia-flyem / galaLinks
Automatic segmentation of electron microscopy volumes
☆77Updated 4 years ago
Alternatives and similar repositories for gala
Users that are interested in gala are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Cython based wrapper for IRTK☆10Updated 9 years ago
- Python module to analyse skeleton (thin object) images☆135Updated last week
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 6 years ago
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- ☆17Updated 7 years ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 8 months ago
- Official SuperElastix repository☆87Updated 6 years ago
- A nifty library for graph based image segmentation.☆46Updated 5 months ago
- Predictive Image Registration☆139Updated 6 years ago
- ☆21Updated 4 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 8 years ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- www.vaa3d.org☆80Updated 7 years ago
- Distributed segmentation for bio-image-analysis☆39Updated 4 months ago
- Deprecated: Read and write image data from and to TIFF files.☆62Updated 6 years ago
- Linear and non-linear image registration methods, using scipy and numpy.☆63Updated 12 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- A curated list of Python projects for non-rigid (i.e. elastic) image registration☆32Updated last year
- Chan-Vese level-sets in Python☆93Updated 4 years ago
- A setup script to generate a Python Wheels☆17Updated last month
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆40Updated 3 years ago