Automatic segmentation of electron microscopy volumes
☆80Jan 15, 2021Updated 5 years ago
Alternatives and similar repositories for gala
Users that are interested in gala are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatic segmentation of electron microscopy volumes☆30Oct 23, 2012Updated 13 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆29May 4, 2017Updated 9 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Jun 24, 2023Updated 3 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- ☆17Feb 3, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- Aligner for large scale serial section image data☆20Jul 7, 2023Updated 3 years ago
- ☆22Jan 6, 2026Updated 9 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆46Jul 28, 2025Updated last year
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- This is the project that we did for the Computer Vision course at Stony Brook University. It is a learning based method where the number …☆10Dec 20, 2014Updated 11 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Mar 25, 2022Updated 4 years ago
- 🌈☆70Oct 10, 2025Updated 11 months ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Sep 10, 2026Updated 3 weeks ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆26Dec 26, 2022Updated 3 years ago
- (Su)per (R)egion (Vo)lume (S)egmentaton workbench☆25Jul 6, 2023Updated 3 years ago
- A nifty library for graph based image segmentation.☆48May 3, 2025Updated last year
- Distributed segmentation for bio-image-analysis☆42Jun 5, 2026Updated 4 months ago
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- ☆11Jun 9, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Apr 14, 2023Updated 3 years ago
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Jan 8, 2023Updated 3 years ago
- Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)☆82Apr 26, 2023Updated 3 years ago
- Read and write Neuroglancer datasets programmatically.☆175Oct 1, 2026Updated last week
- A Python package for feature extraction of neural morphologies☆48Aug 19, 2026Updated last month
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- A federated image segmentation method based on style transfer☆16Sep 28, 2024Updated 2 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆361Updated this week
- Collection of tools for automated processing and clustering of electron diffraction data☆13May 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pyHPC workshop☆11May 17, 2022Updated 4 years ago
- Image segmentation with a Markov random field☆23Apr 7, 2019Updated 7 years ago
- Simple watershed and agglomeration library for affinity graphs.☆31Updated this week
- Next generation of SuRVoS☆10Oct 11, 2023Updated 2 years ago
- Marching Cubes & Mesh Simplification on multi-label 3D images.☆75Aug 25, 2026Updated last month
- Extended version of the Berkeley Segmentation Benchmark [1] used for evaluation in [2].☆43Mar 28, 2019Updated 7 years ago
- Software package for neuron reconstruction and visualization☆40May 27, 2025Updated last year