janelia-flyem / galaLinks
Automatic segmentation of electron microscopy volumes
☆77Updated 4 years ago
Alternatives and similar repositories for gala
Users that are interested in gala are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Rhoana - Dense Automated Neuron Annotation pipeline☆28Updated 8 years ago
- Python module to analyse skeleton (thin object) images☆128Updated last month
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆69Updated 2 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- A nifty library for graph based image segmentation.☆45Updated 2 months ago
- Biomedical Visualization and Analysis Framework☆41Updated last year
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Linear and non-linear image registration methods, using scipy and numpy.☆63Updated 12 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆39Updated 3 years ago
- Deprecated: Read and write image data from and to TIFF files.☆62Updated 6 years ago
- This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…☆23Updated 8 years ago
- ☆17Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Official SuperElastix repository☆87Updated 6 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ☆21Updated 4 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 10 months ago
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆44Updated last year
- Distributed segmentation for bio-image-analysis☆38Updated 2 months ago
- Axon/Myelin segmentation using Deep Learning☆123Updated this week
- The Image Registration Toolkit☆80Updated 7 years ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 8 months ago
- ☆49Updated 7 years ago
- www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200☆42Updated last month
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago