janelia-flyem / galaLinks
Automatic segmentation of electron microscopy volumes
☆77Updated 4 years ago
Alternatives and similar repositories for gala
Users that are interested in gala are comparing it to the libraries listed below
Sorting:
- Python module to analyse skeleton (thin object) images☆137Updated 3 weeks ago
- Automatic segmentation of electron microscopy volumes☆31Updated 13 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Cython based wrapper for IRTK☆10Updated 10 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 6 years ago
- Biomedical Visualization and Analysis Framework☆43Updated last year
- Official SuperElastix repository☆88Updated 6 years ago
- Chan-Vese level-sets in Python☆94Updated 4 years ago
- Linear and non-linear image registration methods, using scipy and numpy.☆63Updated 12 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Deprecated: Read and write image data from and to TIFF files.☆62Updated 6 years ago
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆174Updated last week
- Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images☆110Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated last year
- ☆17Updated 7 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- Simple pure-python module for reading and writing nrrd files.☆122Updated 9 months ago
- This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…☆23Updated 8 years ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- A setup script to generate ITK Python Wheels☆63Updated 3 weeks ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- A setup script to generate a Python Wheels☆17Updated this week
- A library to facilitate machine learning on multi-dimensional images.☆86Updated 3 weeks ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago