Alternatives and similar repositories for deepem3d:

Users that are interested in deepem3d are comparing it to the libraries listed below

• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆21Updated 5 months ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• nilsec / micron
  Library for automatic tracking of microtubules in large scale EM datasets.
  ☆9Updated 2 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆12Updated 3 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆60Updated 5 years ago
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated last week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated last week
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• BigNeuron / Data
  ☆16Updated 8 years ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 7 months ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 3 years ago
• mhlabCodingTeam / SegEM
  Semi automated image analysis toolkit for Connectomics
  ☆12Updated 5 years ago
• mhaft / DeepVess
  ☆29Updated last year
• funkelab / lsd
  🌈
  ☆54Updated last week
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆33Updated last year
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆70Updated 3 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated last month
• janelia-cellmap / cellmap-segmentation-challenge
  Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …
  ☆29Updated last week
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• khaledkhairy / EM_aligner
  A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.
  ☆12Updated 6 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆20Updated last year
• janelia-cellmap / heinrich-2021a
  Resources for Heinrich et al., 2021
  ☆18Updated 3 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆47Updated 10 months ago