☆17Feb 3, 2018Updated 8 years ago
Alternatives and similar repositories for deepem3d
Users that are interested in deepem3d are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- ☆22Jan 6, 2026Updated 7 months ago
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Mar 21, 2023Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation method☆36Jun 27, 2023Updated 3 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Mar 10, 2018Updated 8 years ago
- 🌈☆70Oct 10, 2025Updated 10 months ago
- Distributed Proofreading of Automatic Segmentations☆15Sep 30, 2022Updated 3 years ago
- GLIA: Graph Learning Library for Image Analysis☆10May 26, 2017Updated 9 years ago
- Block-wise task scheduling for large nD volumes.☆33Updated this week
- A curated list of resources for 3D segmentation of neurites in EM images☆59Mar 11, 2024Updated 2 years ago
- CellTracker: An Automated Toolbox for Single-Cell Segmentation and Tracking in Microscopy Images☆20Dec 2, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Leonardo Citraro, Mateusz Kozinski, Pascal Fua, Towards Reliable Evaluation of Road Network Reconstructions, ECCV 2020☆11Aug 21, 2020Updated 6 years ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆26Dec 26, 2022Updated 3 years ago
- Flood-Filling Networks for instance segmentation in 3d volumes.☆350Updated this week
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 11 months ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- Aligner for large scale serial section image data☆19Jul 7, 2023Updated 3 years ago
- Automatic segmentation of electron microscopy volumes☆80Jan 15, 2021Updated 5 years ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆46Jul 28, 2025Updated last year
- Semi automated image analysis toolkit for Connectomics☆12Aug 21, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆23Nov 5, 2015Updated 10 years ago
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆200Updated this week
- Tensorflow and Pytorch Version of Malis Loss☆17Nov 8, 2020Updated 5 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆14Feb 28, 2018Updated 8 years ago
- MATLAB code for performing the coalescent embedding☆13May 23, 2023Updated 3 years ago
- Cyclic Guidance for Weakly Supervised Joint Detection and Segmentation☆21Mar 14, 2020Updated 6 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆127Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatic segmentation of electron microscopy volumes☆30Oct 23, 2012Updated 13 years ago
- These Python notebooks reproduce some figures in the following preprint using the libraries pyMOU and NetDynFlow: https://www.biorxiv.org…☆12Feb 28, 2023Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆33Aug 10, 2023Updated 3 years ago
- A 3D level set method, based on a paper for X-Ray CT segmentation of root systems in WACV 2018.☆25Jul 29, 2019Updated 7 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- code for paper IJCAI2022☆13Jul 2, 2024Updated 2 years ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago