divelab / deepem3dLinks
☆17Updated 7 years ago
Alternatives and similar repositories for deepem3d
Users that are interested in deepem3d are comparing it to the libraries listed below
Sorting:
- ☆21Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- Deep Learning for EM Connectomics☆15Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆24Updated 8 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Library for automatic tracking of microtubules in large scale EM datasets.☆9Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- 🌈☆59Updated 3 months ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Updated 4 years ago
- Tensorflow and Pytorch Version of Malis Loss☆17Updated 4 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆13Updated 6 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆38Updated 2 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- official implementation of the PatchPerPix instance segmentation method☆33Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- ☆16Updated 8 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆69Updated 2 years ago
- Resources for Heinrich et al., 2021☆18Updated 4 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated last month
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆73Updated 3 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆33Updated 3 weeks ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 4 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 10 months ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆48Updated last year