Alternatives and similar repositories for EM_aligner

Users that are interested in EM_aligner are comparing it to the libraries listed below

• betaseg / cellsketch
  ☆10Updated last year
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 3 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated last month
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last year
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆27Updated 5 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• MIDA-group / inspire
  INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
  ☆12Updated 4 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆52Updated this week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 months ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated 3 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• jo-mueller / Slice2Volume
  Script that registers Histology slices to volumetric image data
  ☆11Updated last year
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 9 months ago
• MIDA-group / globalign
  Fast global mutual information-based rigid alignment in the Fourier domain
  ☆32Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 months ago
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆80Updated this week
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 5 months ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆20Updated 5 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 6 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• Ajaxels / MIB2
  Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…
  ☆35Updated 2 months ago
• JackieZhai / awesome-vem-datasets
  Open source volume electron microscopy (vEM) datasets for connectomics.
  ☆14Updated 9 months ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆97Updated 2 weeks ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆74Updated 4 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• chunglabmit / pystripe
  An image processing package for removing streaks from SPIM images
  ☆35Updated last year