Alternatives and similar repositories for EM_aligner:

Users that are interested in EM_aligner are comparing it to the libraries listed below

• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆14Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 5 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆54Updated last week
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆37Updated this week
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆15Updated last year
• betaseg / cellsketch
  ☆10Updated last year
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆20Updated 4 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• SebastienTs / LOBSTER
  Little OBjects Segmentation and Tracking EnviRonment
  ☆9Updated 4 years ago
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆25Updated 4 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• MIDA-group / inspire
  INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration
  ☆12Updated 3 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 2 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆48Updated last week
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆16Updated this week
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆15Updated 3 weeks ago
• SWC-Advanced-Microscopy / StitchIt
  Stitching of large tiled datasets
  ☆19Updated last month
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆14Updated 2 years ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated 3 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆13Updated this week
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated this week
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆30Updated last month
• VolkerH / NapariPlayground
  my first baby steps with Napari
  ☆10Updated 5 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆9Updated 3 years ago
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆73Updated last week
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago