constantinpape / torch-emLinks
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
☆113Updated this week
Alternatives and similar repositories for torch-em
Users that are interested in torch-em are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆26Updated 2 years ago
- Segment Anything for Medical Imaging☆28Updated last month
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- StarDist PyTorch☆47Updated 3 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points,…☆104Updated 3 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆166Updated 2 months ago
- Unsupervised Instance Segmentation in Microscopy☆26Updated last year
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆146Updated 8 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆59Updated last month
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- Segment anything with our Napari integration of Meta AI's Segment Anything Model (SAM)!☆243Updated last year
- Python package for deep learning based image to image transformation☆53Updated 2 months ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 3 years ago
- Easy Volumetric Segmentation with Deep Learning☆28Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆122Updated 3 weeks ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆157Updated last year
- 🌈☆67Updated 3 months ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆53Updated last year
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆187Updated last month
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- ☆205Updated 2 years ago
- ☆93Updated 7 months ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- QuPath extension for Segment Anything Model (SAM)☆126Updated 5 months ago
- ☆207Updated last week
- Interactive Segmentation of Nucleus☆66Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago