constantinpape / torch-emLinks
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
☆110Updated 3 weeks ago
Alternatives and similar repositories for torch-em
Users that are interested in torch-em are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆25Updated 2 years ago
- Segment Anything for Medical Imaging☆27Updated last month
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Codebase for "A Foundation Model for Cell Segmentation"☆116Updated 3 weeks ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated 2 weeks ago
- ☆102Updated 2 months ago
- Easy Volumetric Segmentation with Deep Learning☆28Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 4 months ago
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆145Updated 7 months ago
- ☆242Updated last year
- StarDist PyTorch☆47Updated 3 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- Transformer-based cell tracking for live-cell microscopy☆112Updated 3 weeks ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- Python package for deep learning based image to image transformation☆53Updated 3 weeks ago
- (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …☆154Updated last year
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- Joint training of denoising and segmentation.☆76Updated 2 years ago
- Unsupervised Instance Segmentation in Microscopy☆24Updated last year
- Parameter Efficient Fine-Tuning of Segment Anything Model☆29Updated 2 months ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated 3 weeks ago
- QuPath extension for Segment Anything Model (SAM)☆125Updated 4 months ago
- ☆22Updated 4 years ago
- 🌈☆66Updated last month
- Encoder-Decoder Cell and Nuclei segmentation models☆95Updated 3 weeks ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated 2 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ☆92Updated 6 months ago