Distributed segmentation for bio-image-analysis
☆43Jun 5, 2026Updated 4 months ago
Alternatives and similar repositories for cluster_tools
Users that are interested in cluster_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility functions for large-scale bio-image analysis.☆64Jul 1, 2026Updated 4 months ago
- Affinity based segmentation algorithms and tools☆12May 12, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 months ago
- The mutex watershed for image segmentation.☆68May 6, 2021Updated 5 years ago
- ☆22Jan 6, 2026Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- python tools for BigDataViewer☆23Jul 2, 2026Updated 4 months ago
- Python tools for MoBIE☆10Jul 3, 2026Updated 3 months ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 7 months ago
- Reconstruction of synaptic structures in electron microscopy☆12Updated this week
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆129Updated this week
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆202Oct 26, 2026Updated last week
- ☆13Aug 16, 2024Updated 2 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆135Jul 2, 2026Updated 4 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆25Dec 2, 2025Updated 11 months ago
- Tool for graph-based image segmentation and analysis☆22Nov 12, 2017Updated 8 years ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- A nifty library for graph based image segmentation.☆48May 3, 2025Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 4 months ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆11Jun 23, 2021Updated 5 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Aug 28, 2024Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆136Updated this week
- ☆17Feb 3, 2018Updated 8 years ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- A napari plugin to view and edit layer metadata☆14Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆49May 1, 2025Updated last year
- Old academic project for my PhD - no longer maintained by me: fast gaussian and derivative convolutional filters☆10May 1, 2019Updated 7 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Resources for teaching/preparing to teach bioimage analysis☆65Updated this week
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆47Nov 13, 2025Updated 11 months ago