constantinpape / cluster_tools
Distributed segmentation for bio-image-analysis
☆37Updated 8 months ago
Alternatives and similar repositories for cluster_tools:
Users that are interested in cluster_tools are comparing it to the libraries listed below
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- ☆20Updated 3 years ago
- Simple watershed and agglomeration library for affinity graphs.☆20Updated 4 months ago
- python tools for BigDataViewer☆21Updated 2 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Optimize image processing workflows in napari☆17Updated 2 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 4 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- A general illumination correction method for optical microscopy.☆39Updated 3 years ago
- MorphoFeatures code and data☆20Updated last year
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Automated Segmentation of cellular substructures in Electron Microscopy☆17Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- ☆12Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated last week
- 🌈☆54Updated last year
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆24Updated 3 months ago
- Tools for handling FIB-SEM data and annotations☆21Updated 6 months ago
- Tools for distributed alignment of massive images☆81Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago