funkey / mala
Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
☆11Updated 3 years ago
Alternatives and similar repositories for mala:
Users that are interested in mala are comparing it to the libraries listed below
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- ☆17Updated 7 years ago
- ☆20Updated 4 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 8 months ago
- Pytorch implementation of the LearnedRandomWalker module☆29Updated 4 years ago
- ☆16Updated 8 years ago
- Distributed segmentation for bio-image-analysis☆37Updated this week
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- Aligner for large scale serial section image data☆15Updated last year
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- 🌈☆55Updated last month
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- Library for automatic tracking of microtubules in large scale EM datasets.☆9Updated 2 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated 2 weeks ago
- official implementation of the PatchPerPix instance segmentation method☆33Updated last year
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆32Updated last week
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆14Updated this week
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- Ranking Operator Response of Path Openings☆28Updated last year