funkey / mala
Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
☆12Updated 3 years ago
Alternatives and similar repositories for mala:
Users that are interested in mala are comparing it to the libraries listed below
- Simple watershed and agglomeration library for affinity graphs.☆22Updated 5 months ago
- Python scripts to read and write the CREMI hdf5 file format.☆38Updated 2 years ago
- ☆18Updated 7 years ago
- ☆20Updated 4 years ago
- Deep Learning for EM Connectomics☆14Updated 2 years ago
- Distributed segmentation for bio-image-analysis☆37Updated last week
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated 7 months ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- ☆16Updated 8 years ago
- 🌈☆54Updated 2 weeks ago
- Library for automatic tracking of microtubules in large scale EM datasets.☆9Updated 2 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆67Updated 2 years ago
- official implementation of the PatchPerPix instance segmentation method☆33Updated last year
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆12Updated 6 years ago
- Aligner for large scale serial section image data☆15Updated last year
- The mutex watershed for image segmentation.☆67Updated 3 years ago
- Biologically-Constrained Graphs for Global Connectomics Reconstruction☆10Updated 4 years ago
- Pytorch implementation of the LearnedRandomWalker module☆29Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Semi automated image analysis toolkit for Connectomics☆12Updated 5 years ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆29Updated this week
- Generalized algorithm for agglomerative clustering of signed graphs☆13Updated 3 years ago
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆47Updated 10 months ago
- Resources for Heinrich et al., 2021☆18Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆60Updated 5 years ago