funkey / malaLinks
Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
☆11Updated 4 years ago
Alternatives and similar repositories for mala
Users that are interested in mala are comparing it to the libraries listed below
Sorting:
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 3 weeks ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ☆17Updated 7 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ☆21Updated 4 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated 2 years ago
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 7 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆70Updated 2 years ago
- ☆16Updated 8 years ago
- official implementation of the PatchPerPix instance segmentation method☆34Updated 2 years ago
- Aligner for large scale serial section image data☆16Updated 2 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆36Updated last year
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 7 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- 🌈☆62Updated 6 months ago
- Flood filling networks for segmenting electron microscopy of neural tissue☆23Updated 2 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Distributed segmentation for bio-image-analysis☆39Updated 4 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated last week
- Tool for graph-based image segmentation and analysis☆21Updated 7 years ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- Image Registration and Computational Anatomy in PyTorch☆21Updated 4 years ago
- Automatic segmentation of electron microscopy volumes☆77Updated 4 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆41Updated last year
- Pytorch implementation of the LearnedRandomWalker module☆29Updated 4 years ago
- Deep Learning for EM Connectomics☆15Updated 3 years ago
- ☆21Updated 7 years ago
- A curated list of resources for 3D segmentation of neurites in EM images☆55Updated last year