Alternatives and similar repositories for biologicalgraphs

Users that are interested in biologicalgraphs are comparing it to the libraries listed below

• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆39Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆27Updated 4 months ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆14Updated 7 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆17Updated 4 years ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆185Updated this week
• ilastik / nature_methods_multicut_pipeline
  ☆22Updated 2 weeks ago
• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆187Updated last month
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆88Updated 6 years ago
• divelab / deepem3d
  ☆17Updated 7 years ago
• mhaft / DeepVess
  ☆30Updated last year
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• balbasty / nitorch
  Neuroimaging in PyTorch
  ☆100Updated this week
• path-openings / RORPO
  Ranking Operator Response of Path Openings
  ☆29Updated last month
• abnan / DRMIME
  DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
  ☆46Updated 5 years ago
• funkelab / lsd
  🌈
  ☆67Updated 3 months ago
• subeeshvasu / Awesome-Neuron-Segmentation-in-EM-Images
  A curated list of resources for 3D segmentation of neurites in EM images
  ☆55Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆75Updated 4 years ago
• fabianbalsiger / point-cloud-segmentation-miccai2019
  Code for the MICCAI 2019 paper Balsiger et al., Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation
  ☆19Updated 3 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆53Updated last year
• seung-lab / torchfields
  A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers
  ☆51Updated 3 years ago
• balakg / voxelmorph
  ☆53Updated 6 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆83Updated 7 years ago
• rundherum / pymia
  pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis
  ☆61Updated last year
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆57Updated 6 months ago
• sciai-lab / pytorch-LearnedRandomWalker
  Pytorch implementation of the LearnedRandomWalker module
  ☆29Updated 5 years ago
• Borda / BIRL
  BIRL: Benchmark on Image Registration methods with Landmark validations
  ☆94Updated 4 years ago
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆174Updated 3 years ago