Alternatives and similar repositories for biologicalgraphs

Users that are interested in biologicalgraphs are comparing it to the libraries listed below

• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆70Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆25Updated 9 months ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 4 years ago
• funkelab / lsd
  🌈
  ☆60Updated 5 months ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 4 years ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated 2 months ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆53Updated this week
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆164Updated last week
• mhaft / DeepVess
  ☆29Updated last year
• divelab / deepem3d
  ☆17Updated 7 years ago
• Borda / BIRL
  BIRL: Benchmark on Image Registration methods with Landmark validations
  ☆93Updated 3 years ago
• abnan / DRMIME
  DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration
  ☆46Updated 5 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• uncbiag / easyreg
  an image registration/augmentation/segmentation package
  ☆172Updated 2 years ago
• biomedia-mira / istn
  Image-and-Spatial Transformer Networks
  ☆111Updated 2 years ago
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆74Updated 4 years ago
• multimodallearning / pdd_net
  Probabilistic Dense Displacement Network (3D discrete deep learning registration)
  ☆64Updated 4 years ago
• seung-lab / corgie
  Command line tool for registration of very large 3D volumes.
  ☆14Updated last year
• balbasty / nitorch
  Neuroimaging in PyTorch
  ☆98Updated last month
• Damseh / VascularGraph
  ☆18Updated 2 years ago
• HelmholtzAI-Consultants-Munich / Malis-Loss
  Tensorflow and Pytorch Version of Malis Loss
  ☆17Updated 4 years ago
• pyushkevich / greedy
  Very fast greedy diffeomorphic registration code
  ☆81Updated 3 months ago
• aschampion / diluvian
  Flood filling networks for segmenting electron microscopy of neural tissue
  ☆23Updated 2 years ago
• RUB-Bioinf / VesselExpress
  🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
  ☆51Updated last year
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆87Updated 6 years ago
• arttumiettinen / pi2
  C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
  ☆55Updated 2 months ago
• balakg / voxelmorph
  ☆53Updated 6 years ago