Rhoana / biologicalgraphs
Biologically-Constrained Graphs for Global Connectomics Reconstruction
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for biologicalgraphs
- Python scripts to read and write the CREMI hdf5 file format.☆37Updated last year
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆66Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆19Updated this week
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).☆12Updated 3 years ago
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge☆15Updated 6 years ago
- ☆29Updated 7 months ago
- Pytorch implementation of the LearnedRandomWalker module☆30Updated 4 years ago
- ☆19Updated 3 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆35Updated 2 months ago
- A curated list of resources for 3D segmentation of neurites in EM images☆45Updated 8 months ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆136Updated 3 months ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆28Updated 3 years ago
- ☆52Updated 5 years ago
- 🌈☆52Updated last year
- The mutex watershed for image segmentation.☆63Updated 3 years ago
- ☆16Updated 8 years ago
- MALIS structured loss function for supervised learning of segmentation and clustering☆18Updated last year
- ☆25Updated 2 years ago
- ☆18Updated 6 years ago
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- Python Implementation of the LDDMM algorithm☆49Updated 4 years ago
- Spherical U-Net for icosahedron discretized spherical surface data☆12Updated 2 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆40Updated 5 months ago
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…☆28Updated 2 years ago
- Computes vesselness scores for 3-dimensional images.☆70Updated 7 years ago
- Neuroimaging in PyTorch☆89Updated last month
- [WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation☆12Updated 5 months ago
- Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Tra…☆18Updated last year
- Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org☆17Updated 6 years ago