TuragaLab / malisLinks
MALIS structured loss function for supervised learning of segmentation and clustering
☆18Updated 2 years ago
Alternatives and similar repositories for malis
Users that are interested in malis are comparing it to the libraries listed below
Sorting:
- MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)☆44Updated 6 years ago
- Automatic segmentation of electron microscopy volumes☆31Updated 13 years ago
- [MICCAI2019 & TMI2020] Overfitting under Class Imbalance: Anaylsis and Improvements for Medical Image Segmentation.☆22Updated 2 years ago
- This is supplementary material for the manuscript: "Semantic Segmentation of Pathological Lung Tissue with Dilated Fully Convolutional Ne…☆32Updated 7 years ago
- Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation…☆55Updated 7 years ago
- Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"☆73Updated 4 years ago
- A PyTorch implementation of the Probabilistic U-Net, applied to probabilistic glioma growth☆43Updated 6 years ago
- Efficient Segmentation for Volumetric Data☆44Updated 6 years ago
- Fully-connected (dense) 3D CRF for processing biomedical scans☆138Updated 7 years ago
- Tensorflow implementation of spatial transformer network for 2d/3d image and supports affine/non-rigid transformation☆44Updated 9 years ago
- ☆29Updated 4 years ago
- Image Registration and Computational Anatomy in PyTorch☆21Updated 4 years ago
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Updated 6 years ago
- Predictive Image Registration☆139Updated 6 years ago
- 3D Unet Equipped with Advanced Deep Learning Methods☆61Updated 5 years ago
- Datasets, Transforms and Utilities specific to Biomedical Imaging☆110Updated 7 years ago
- Chan-Vese level-sets in Python☆94Updated 4 years ago
- code of DenseVoxNet and 3D-DSN☆89Updated 8 years ago
- The Image Registration Toolkit☆80Updated 7 years ago
- ☆53Updated 6 years ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆101Updated 2 years ago
- U-Net Model for Image Segmentation Problems using PyTorch 0.4☆38Updated 5 years ago
- Segmenting WSIs using Deep Convolutional Neural Networks☆19Updated 7 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- An end-to-end coarse-to-fine framework for organ segmentation☆62Updated 5 years ago
- The mutex watershed for image segmentation.☆67Updated 4 years ago
- ☆21Updated 7 years ago
- UNet deep learning model for medical image segmentation☆49Updated 2 years ago
- Implementation of quasi-conformal regional flattening of the left atrium☆13Updated 2 years ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆37Updated last year