Alternatives and similar repositories for malis

Users that are interested in malis are comparing it to the libraries listed below

• jni / ray
  Automatic segmentation of electron microscopy volumes
  ☆31Updated 12 years ago
• sacmehta / WSISegmentation
  Segmenting WSIs using Deep Convolutional Neural Networks
  ☆19Updated 6 years ago
• mattiaspaul / OBELISK
  MIDL 2018 / MEDIA 2019: one binary extremely large and inflecting sparse kernel (pytorch)
  ☆44Updated 5 years ago
• funkey / mala
  Training and evaluation scripts for MALA (https://arxiv.org/abs/1709.02974).
  ☆11Updated 3 years ago
• ZerojumpLine / OverfittingUnderClassImbalance
  [MICCAI2019 & TMI2020] Overfitting under Class Imbalance: Anaylsis and Improvements for Medical Image Segmentation.
  ☆22Updated last year
• celisun / Deep_learning_automated__neuron_segmentation
  Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
  ☆17Updated 7 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• josedolz / SemiDenseNet
  Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation…
  ☆55Updated 7 years ago
• sciai-lab / mutex-watershed
  The mutex watershed for image segmentation.
  ☆67Updated 4 years ago
• sciai-lab / pytorch-LearnedRandomWalker
  Pytorch implementation of the LearnedRandomWalker module
  ☆29Updated 4 years ago
• yulequan / HeartSeg
  code of DenseVoxNet and 3D-DSN
  ☆88Updated 7 years ago
• torms3 / Superhuman
  Superhuman Accuracy on the SNEMI3D Connectomics Challenge
  ☆15Updated 7 years ago
• MIC-DKFZ / probabilistic_unet
  A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.
  ☆23Updated 6 years ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆21Updated 3 months ago
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 9 months ago
• jmerkow / I2I
  ☆10Updated 8 years ago
• SamuelJoutard / Permutohedral_attention_module
  ☆29Updated 3 years ago
• shirgur / UMIS
  Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"
  ☆73Updated 4 years ago
• HKervadec / shape_descriptors
  Code for our MIDL 2021 submission
  ☆16Updated 4 years ago
• sacmehta / 3D-ESPNet
  Efficient Segmentation for Volumetric Data
  ☆44Updated 6 years ago
• Ryo-Ito / spatial_transformer_network
  Tensorflow implementation of spatial transformer network for 2d/3d image and supports affine/non-rigid transformation
  ☆44Updated 8 years ago
• zengyu714 / segmentation-pytorch
  Several networks for segmentation like VNet or RefineNet implemented by PyTorch and Visdom
  ☆32Updated 8 years ago
• trypag / NonAdjLoss
  ☆28Updated 5 years ago
• KitwareMedical / pyLAR
  This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applicatio…
  ☆23Updated 8 years ago
• looooongChen / instance_segmentation_with_pixel_embeddings
  Instance segmentation via deep pixel embedding
  ☆23Updated 4 years ago
• pfnet-research / label-efficient-brain-tumor-segmentation
  ☆21Updated 4 years ago
• francescociompi / stain-normalization-isbi-2017
  Stain normalization parameters used in the paper "F. Ciompi et al., The importance of stain normalization in colorectal tissue classifica…
  ☆28Updated 6 years ago
• SaadUllahAkram / CellProposalNetwork
  Demos for Cell Proposal Networks presented in ICIP 16 and DLMIA 16 (MICCAI-W)
  ☆17Updated 8 years ago
• mohamed-ezz / saratan
  Code for MICCAI 2016 paper : Automatic liver and lesions segmentation using Cascaded Fully Convolutional Neural Networks and 3D Condition…
  ☆39Updated 5 years ago
• adbrebs / brain_segmentation
  Segment 3D MRIs of the brain into anatomical regions
  ☆36Updated 10 years ago