crazyhottommy / DNA-seq-analysisLinks
DNA sequencing analysis notes from Ming Tang
☆149Updated 2 years ago
Alternatives and similar repositories for DNA-seq-analysis
Users that are interested in DNA-seq-analysis are comparing it to the libraries listed below
Sorting:
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated 3 weeks ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Practical, reusable scripts for bioinformatics☆102Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- ☆120Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆163Updated 2 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆174Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago
- ☆157Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆98Updated last week
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆135Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Learning the Variant Call Format☆147Updated 4 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆156Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80Updated 5 years ago