crazyhottommy / DNA-seq-analysis
DNA sequencing analysis notes from Ming Tang
☆142Updated last year
Related projects ⓘ
Alternatives and complementary repositories for DNA-seq-analysis
- Practical, reusable scripts for bioinformatics☆97Updated 5 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆132Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆105Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆62Updated 4 years ago
- Genomic Interactive Visualization Engine☆145Updated last year
- RNA-Seq analysis workflow☆105Updated 3 years ago
- ASCAT R package☆170Updated 3 weeks ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- RNA-seq data analysis practical☆60Updated 10 years ago
- Documentation and description of AWS iGenomes S3 resource.☆107Updated 4 years ago
- New user☆42Updated 4 years ago
- Next-Generation Sequencing(NGS) toolkits.☆44Updated 8 years ago
- Learning the Variant Call Format☆137Updated 7 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- Gene fusion detection and visualization☆115Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆121Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆121Updated 3 months ago
- ☆115Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆141Updated 2 weeks ago
- Software program for checking sample matching for NGS data☆125Updated 5 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆140Updated 2 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆107Updated 5 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆142Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆103Updated 4 years ago
- Check strandedness of RNA-Seq fastq files☆115Updated 2 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated 2 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆104Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆152Updated 3 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆104Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆164Updated 5 months ago