An information-theoretic pipeline for methylation analysis of WGBS data
☆24Apr 9, 2019Updated 7 years ago
Alternatives and similar repositories for informME
Users that are interested in informME are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 9 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34Aug 1, 2024Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆63May 9, 2025Updated last year
- DNA methylation analysis notes from Ming Tang☆93Sep 19, 2019Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 2 years ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32May 11, 2026Updated last week
- ☆28Sep 23, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jul 9, 2024Updated last year
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Jan 18, 2017Updated 9 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Feb 14, 2022Updated 4 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆83Apr 24, 2025Updated last year
- Implements several Markov chain Monte Carlo (MCMC) algorithms for the latent Dirichlet allocation (LDA) model☆11Feb 11, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Apr 22, 2021Updated 5 years ago
- Web-based Workflow for Metabolomics and Proteomics Data Analysis☆18Mar 25, 2026Updated last month
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- A toolkit to bulk-submission, download, analysis and summarizing data from abYsis.org☆10Apr 20, 2020Updated 6 years ago
- ☆21Dec 26, 2025Updated 4 months ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago