GarrettJenkinson / informME
An information-theoretic pipeline for methylation analysis of WGBS data
☆25Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for informME
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- binned motif enrichment analysis and visualisation☆38Updated 3 weeks ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆27Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Explore and download data from the recount3 project☆31Updated 6 months ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆40Updated this week
- ☆29Updated 5 years ago
- ☆33Updated 4 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆16Updated 6 years ago
- ☆42Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated 9 months ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆18Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- ☆37Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- ☆53Updated last month
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago