GuoliangLi-HZAU / BatMeth2Links
BS-seq analysis pipeline
☆44Updated 2 years ago
Alternatives and similar repositories for BatMeth2
Users that are interested in BatMeth2 are comparing it to the libraries listed below
Sorting:
- A versatile aligning pipeline for bisulfite sequencing data☆66Updated 7 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- Tools for analyzing DNA methylation data☆44Updated last week
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- Allele-specific alignment sorting☆60Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆74Updated last year
- ☆59Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆89Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- ☆54Updated 2 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 5 months ago
- QDNAseq package for Bioconductor☆52Updated last year
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆36Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆85Updated last year
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- ☆21Updated last month
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 4 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆49Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year