yupenghe / methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
☆140Updated last year
Alternatives and similar repositories for methylpy:
Users that are interested in methylpy are comparing it to the libraries listed below
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆108Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆145Updated last week
- Detecting sites of genomic enrichment☆190Updated last year
- ☆129Updated 6 years ago
- Generate IGV style locus tracks from bigWig files in R☆155Updated 4 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 4 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆89Updated last month
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 3 years ago
- ASCAT R package☆176Updated this week
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- ☆147Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆244Updated last month
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆198Updated 4 months ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆111Updated last month
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆144Updated 9 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆126Updated 7 months ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- A collection of scripts and notes related to genomics and bioinformatics☆207Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆210Updated last week
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆139Updated 2 weeks ago
- ☆142Updated last month
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆106Updated 3 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆177Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago