ENCODE-DCC / dna-me-pipelineLinks
DCC/DAC methylation pipeline source
☆55Updated 4 years ago
Alternatives and similar repositories for dna-me-pipeline
Users that are interested in dna-me-pipeline are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Enhanced version of the FastQTL QTL mapper☆66Updated 2 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆30Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- ☆43Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 2 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆38Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆65Updated 6 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 3 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- ☆69Updated last year
- QDNAseq package for Bioconductor☆50Updated 10 months ago