ENCODE-DCC / dna-me-pipeline
DCC/DAC methylation pipeline source
☆55Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for dna-me-pipeline
- Tutorial Website☆53Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ☆30Updated 6 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- STARRPeaker: STARR-seq peak caller☆15Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆43Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- ☆13Updated 7 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- ☆37Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆44Updated 7 months ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- ☆32Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 2 years ago
- ☆17Updated 5 years ago
- RNA editing tests☆16Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago