jts / methylation-analysisLinks
☆45Updated 8 years ago
Alternatives and similar repositories for methylation-analysis
Users that are interested in methylation-analysis are comparing it to the libraries listed below
Sorting:
- ☆51Updated 6 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Structural variant merging tool☆54Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- UCSC Nanopore☆43Updated 6 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago