jts / methylation-analysis
☆43Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for methylation-analysis
- Structural variant caller☆54Updated 2 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- ☆29Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- ☆51Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- Adapters for trimming☆30Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Evolutionary Transcriptomics with R☆41Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆79Updated 6 months ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- SV genotyping with long reads☆40Updated last year
- ☆21Updated last week
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 5 years ago
- Structural variant merging tool☆44Updated 2 months ago