FoxoTech / methylprep
Python-based preprocessing software for Illumina methylation arrays
☆36Updated last year
Alternatives and similar repositories for methylprep:
Users that are interested in methylprep are comparing it to the libraries listed below
- Cellsnake tool main repo☆34Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated 2 years ago
- ☆21Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆59Updated last year
- ☆38Updated 6 months ago
- Python-based Illumina methylation array analysis software☆16Updated last year
- Python package to annotate and visualize gene fusions.☆61Updated 6 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 2 months ago
- ☆18Updated 3 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆20Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆36Updated 3 months ago
- Single Cell Analysis Automated Workflow☆27Updated last year
- FusionAnnotator source code☆14Updated last year
- Builds a PEP from SRA or GEO accessions☆48Updated 6 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- A Nextflow workflow for HLA typing using HLA-HD☆11Updated 8 months ago
- Multi-omics factor analysis v2☆44Updated 5 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- A tool for timing complex copy number gains in cancer.☆17Updated last week
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year
- Clinical interpretation of somatic mutations in cancer☆44Updated last month