NCBI-Hackathons / ConsensusMLLinks
Machine Learning to Detect Cancer Biomarkers from RNAseq Data
☆34Updated 6 years ago
Alternatives and similar repositories for ConsensusML
Users that are interested in ConsensusML are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆17Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- a R package to identify neoantigens from NGS data☆19Updated 8 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 11 months ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 10 months ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 weeks ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 7 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 8 months ago
- HOT regions paper☆11Updated 6 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 7 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- ☆36Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Visual exploratory analysis of gene expression data☆43Updated 3 months ago
- Analysis for svaseq paper☆19Updated 10 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 3 weeks ago
- Snakemake pipeline for running MAJIQ☆23Updated last year