Machine Learning to Detect Cancer Biomarkers from RNAseq Data
☆35Aug 9, 2019Updated 6 years ago
Alternatives and similar repositories for ConsensusML
Users that are interested in ConsensusML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 8 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- 肿瘤突变负荷学习笔记（tumor mutation burden）☆16Dec 10, 2019Updated 6 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Software and analysis of metabolism studies across multiple cancer types☆10Sep 5, 2017Updated 8 years ago
- A no hassle tool for analyzing your favorite CRISPR screen dataset!☆11Apr 16, 2021Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆42Nov 21, 2022Updated 3 years ago
- Self-guided educational workshop for ChIP-Seq and RNA-Seq☆14Sep 15, 2020Updated 5 years ago
- computational training at Fred Hutch☆12Jun 11, 2021Updated 4 years ago
- ☆13Nov 30, 2018Updated 7 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Mar 9, 2026Updated 2 weeks ago
- CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens☆19Apr 19, 2019Updated 6 years ago
- BWMR (Bayesian Weighted Mendelian Randomization)☆21Jun 14, 2023Updated 2 years ago
- Subclassification of disease states based on the intersection of literature and expression☆12Jan 15, 2019Updated 7 years ago
- Angular.js app for Open Targets Platform☆15Apr 28, 2021Updated 4 years ago
- ☆11Dec 20, 2024Updated last year
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- ATAC_seq Workshop☆13Feb 16, 2018Updated 8 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- ☆12May 8, 2025Updated 10 months ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- Examples on using EpiGraphDB☆29Mar 22, 2021Updated 5 years ago
- single RNA-seq analysis of human keloid samples☆12May 25, 2021Updated 4 years ago
- Biological insights into the epigenetic ageing clock☆11Feb 11, 2020Updated 6 years ago